View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7239_low_5 (Length: 500)
Name: NF7239_low_5
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7239_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 13 - 496
Target Start/End: Original strand, 51390844 - 51391328
Alignment:
| Q |
13 |
acatcaatttagcgagttacatttacattacattttttcttggtacatagaacagtggaagcttttcttgcaagattggtttagcatttgtttccacatt |
112 |
Q |
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| T |
51390844 |
acatcaatttagcgagttacatttacattacattttttcttggtacatagaacagtggaagcttttcttgcaagattggtttagcatttgtttccacatt |
51390943 |
T |
|
| Q |
113 |
gattttcgttaaaatgtt-gtattaatattgtcgtttgttaaattttatctgaaattttgttgcgattgagcagttgacaactgctgctgtgaatcttga |
211 |
Q |
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| T |
51390944 |
gattttcgttaaaatgtttgtattaatattgtcgtttgtcaaattttatctgaaattttgttgcgattgagcagttgacaactgctactgtgaatcttga |
51391043 |
T |
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| Q |
212 |
gctaccccgacgtaattttcagtagctctaatgtgtagcttctgattcatcgtgatgttcgaatccccaagcatacatgtagagtgcttgttcagatgta |
311 |
Q |
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| T |
51391044 |
gctaccccgacgtaattttcagtagctctaatgtgtagcttctgattcatagtgatgttcgaatccccaagcatacatgtagagtgcttgttcagatgta |
51391143 |
T |
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| Q |
312 |
accttgaccgtaaatatgtaatggaatggggggatgtcttggattgatttgttttgaactgcttacttcaaatacggttatttgaacaatatagttgttg |
411 |
Q |
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| T |
51391144 |
accttgactgtaaatatgtaatggaatggggggatgtcttggattgatttgttttgaattgcttacttcaaatacggttatttgaacaatatagttgttg |
51391243 |
T |
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| Q |
412 |
gtgtcttatcttaggtgttgctgggttctgggtttggagaagaagggtatgacgatgaagaaggattttgggtttcatctcactc |
496 |
Q |
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| T |
51391244 |
gtgtcttatcttaggtgttgctgggttctgggtttggagaaaaagggtatgatgatgaagaaggattttgggtttcatctcactc |
51391328 |
T |
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