View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7239_low_6 (Length: 447)

Name: NF7239_low_6
Description: NF7239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7239_low_6
NF7239_low_6
[»] chr2 (4 HSPs)
chr2 (13-316)||(14953395-14953698)
chr2 (356-432)||(14953277-14953353)
chr2 (366-433)||(40833270-40833336)
chr2 (360-433)||(14002214-14002287)
[»] chr7 (3 HSPs)
chr7 (13-316)||(4561422-4561725)
chr7 (356-432)||(4561772-4561848)
chr7 (365-433)||(1101734-1101801)
[»] chr8 (2 HSPs)
chr8 (13-316)||(5370525-5370828)
chr8 (356-432)||(5370406-5370482)
[»] chr3 (2 HSPs)
chr3 (362-433)||(46697191-46697262)
chr3 (174-211)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (368-433)||(23885849-23885914)
[»] chr4 (1 HSPs)
chr4 (365-433)||(56398469-56398536)
[»] chr1 (1 HSPs)
chr1 (360-433)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (393-425)||(37606037-37606069)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 14953698 - 14953395
Alignment:
Q  13 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953698 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 14953599  T
Q  113 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 212  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953598 cagtcagtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 14953499  T
Q  213 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953498 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 14953399  T
Q  313 taag 316  Q
    ||||    
T  14953398 taag 14953395  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 14953353 - 14953277
Alignment:
Q  356 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14953353 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 14953277  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 40833270 - 40833336
Alignment:
Q  366 gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| |||||||||    
T  40833270 gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttgatgtc 40833336  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 14002214 - 14002287
Alignment:
Q  360 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||| ||||| |||||||||||||||||  | ||||  |||||| ||||  |||||| ||||||||||||||||    
T  14002214 actggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtc 14002287  T

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Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 4561422 - 4561725
Alignment:
Q  13 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561422 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 4561521  T
Q  113 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 212  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561522 cagtcggtgatctgaatctgagagttgcaggtcgtttgcagaagtggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 4561621  T
Q  213 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561622 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 4561721  T
Q  313 taag 316  Q
    ||||    
T  4561722 taag 4561725  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 356 - 432
Target Start/End: Original strand, 4561772 - 4561848
Alignment:
Q  356 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4561772 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 4561848  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 433
Target Start/End: Original strand, 1101734 - 1101801
Alignment:
Q  365 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||| |||||| |||||| |||||| |||||||||| || ||||  |||||||||||||||||| ||||    
T  1101734 tgtacaaatactgtataa-tatacgatgaacagtgtatgatgtctaatttgtgtttgtattttggtgtc 1101801  T

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Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 5370828 - 5370525
Alignment:
Q  13 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370828 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 5370729  T
Q  113 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 212  Q
    ||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370728 cagtcagtgatcagaatctgagagttgcaggtcgtttgcagaagaggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 5370629  T
Q  213 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370628 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 5370529  T
Q  313 taag 316  Q
    ||||    
T  5370528 taag 5370525  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 5370482 - 5370406
Alignment:
Q  356 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 432  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5370482 gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 5370406  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 362 - 433
Target Start/End: Original strand, 46697191 - 46697262
Alignment:
Q  362 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46697191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgtc 46697262  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
Q  174 ttgttggtggtggtcagatctaagctgatcggagaaga 211  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46697010 ttgttggtggtggtcagatctgagctgatcggagaaga 46697047  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 23885914 - 23885849
Alignment:
Q  368 ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||||||| |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  23885914 ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 23885849  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 433
Target Start/End: Original strand, 56398469 - 56398536
Alignment:
Q  365 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||| |||||| |||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  56398469 tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 56398536  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 433
Target Start/End: Complemental strand, 6284650 - 6284577
Alignment:
Q  360 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 433  Q
    |||||| ||| ||||||||||||| ||||  |||| | |||||| ||||  |||||||||||||||||||||||    
T  6284650 actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttgatgtc 6284577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
Q  393 aacagtgtttggtgtcatatttgtgtttgtatt 425  Q
    |||||||| ||||||||||||||||||||||||    
T  37606037 aacagtgtatggtgtcatatttgtgtttgtatt 37606069  T

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