View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_10 (Length: 372)
Name: NF7240_high_10
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 37139140 - 37138791
Alignment:
| Q |
1 |
agttgtatgcggagacacttgctcaatatgtgaaaccagaatttgagcctcaagtcatccgtgaccccttacttcataagagatgctaatgacctgtgct |
100 |
Q |
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| T |
37139140 |
agttgtatgtggagacacttgctcaatatgtgaaaccagaatttgagcctcaagtcatccgtgaccccttacttcataagagatgctaatgacctgtgct |
37139041 |
T |
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| Q |
101 |
agaaagtgttcattacattcttttcaaactgttttctgtgtggtatattatgtaatattatgtattatgctcgaaagaaacaacttcaaatgaagtttcc |
200 |
Q |
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| T |
37139040 |
agaaagtgttcattacattcttttcaaactgttttctgtgtggtatat----------tatgcattatgctcgaaagaaacaacttcaaatgaagtttcc |
37138951 |
T |
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| Q |
201 |
aatgttcagctcttagtaaaccgccaagaatagtg-aaaatcac--nnnnnnnncctttcctaaaataaactaattcacttatacataaataaaatgtat |
297 |
Q |
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| T |
37138950 |
aatgttcagctcttagtaaaccgccaagaatagtgaaaaatcacttttttttttcctttcctaaaataaactaattcacttatacataaataaaatgtat |
37138851 |
T |
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| Q |
298 |
ctgaaattgttttgtctttgttttagttattaaggtgtgttcatcctgattgtaacattt |
357 |
Q |
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| T |
37138850 |
ctgaaattgttttggctttgttttagttattaaggtgtgttcatcctgattgtaacattt |
37138791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 37135118 - 37135012
Alignment:
| Q |
1 |
agttgtatgcggagacacttgctcaatatgtgaaaccagaatttgagcctcaagtcatccgtgaccccttacttcataagagatgctaatgacctgtgct |
100 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| || |||||||||||| |
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| T |
37135118 |
agttgtatgcggagacacttgctaagtatgtgaaaccagactttgagcctcaagtcatccgtgatccgttacttcataagagatcctcatgacctgtgct |
37135019 |
T |
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| Q |
101 |
agaaagt |
107 |
Q |
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| T |
37135018 |
agaaagt |
37135012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 37134837 - 37134754
Alignment:
| Q |
267 |
actaattcacttatacataaataaaatgtatctgaaattgttttgtctttgttttagttattaaggtgtgttcatcctgattgta |
351 |
Q |
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||||||||| | || ||||||||||||| || |||| | |||| |||||||||| ||||||| ||||||||||||| |||||| |
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| T |
37134837 |
actaattcaataatgcataaataaaatgaatgtgaagtaattttc-ctttgttttaattattaatgtgtgttcatcctcattgta |
37134754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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