View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_12 (Length: 366)
Name: NF7240_high_12
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 43802746 - 43803078
Alignment:
| Q |
17 |
gacatcactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaatcaagt |
116 |
Q |
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| T |
43802746 |
gacatgactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacgtgaccaatcaagt |
43802845 |
T |
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| Q |
117 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactacttaggtgcttgtctcatgtctgtattaatattagcatatgctattactgtataca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43802846 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactacttaggtgcttgtctcatgtctgtattaatattagcatatgctattacagtataca |
43802945 |
T |
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| Q |
217 |
actgtcaaatagattacttgcgtagcatgtaactacttggcagttatgttagttagttggagtttgtcatgtgttagctattccatgtaggtgactacaa |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43802946 |
actgtcaaatagattacttgcgtagtatgtaactacttggcagttatgttagttagttggagtttgttatgtgttagctattccatgtaggtgactacaa |
43803045 |
T |
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| Q |
317 |
taagcaagcatagatcacaattcatgtatatat |
349 |
Q |
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| T |
43803046 |
taagcaaacatagatcacaattcatgtatatat |
43803078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 43813315 - 43813460
Alignment:
| Q |
17 |
gacatcactgaaaagtttggtctctcaaccccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaatcaagt |
116 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43813315 |
gacatgactgaaaagtttggtctctcaatcccaagagccaaacacttgcttgcagtgccaacatatcgccttcatggggaagcaacatgaccaattaagt |
43813414 |
T |
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| Q |
117 |
ttattttagttcaaggtctgaactaatagaaagttgtagtactact |
162 |
Q |
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| T |
43813415 |
ttgctttagttcaaggattgaactaatgtaaagttgtactactact |
43813460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 38617252 - 38617361
Alignment:
| Q |
203 |
tattactgtatacaactgtcaaatagattacttgcgtagcatgtaactacttggcagttatgttagttagttggagtttgtcatgtgttagctattccat |
302 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||| ||||||| |||| || ||||||||| |||||||| |
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| T |
38617252 |
tattacagtatacaactgtcaaatagattacctgcgtagcaagtaactgcttgacagttatgttaattagttgaagttggttatgtgttaggtattccat |
38617351 |
T |
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| Q |
303 |
gtaggtgact |
312 |
Q |
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|||||||||| |
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| T |
38617352 |
gtaggtgact |
38617361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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