View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_high_14 (Length: 343)

Name: NF7240_high_14
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_high_14
NF7240_high_14
[»] chr6 (13 HSPs)
chr6 (19-272)||(34925378-34925631)
chr6 (19-198)||(34928624-34928803)
chr6 (19-191)||(34929740-34929912)
chr6 (19-144)||(34935280-34935405)
chr6 (119-247)||(34935410-34935544)
chr6 (119-247)||(34929894-34930028)
chr6 (119-247)||(34928778-34928912)
chr6 (148-225)||(34928837-34928914)
chr6 (137-213)||(34928856-34928932)
chr6 (137-237)||(34929942-34930042)
chr6 (137-237)||(34935458-34935558)
chr6 (165-267)||(34928740-34928842)
chr6 (168-198)||(34929835-34929865)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 34925378 - 34925631
Alignment:
Q  19 cttctgccgcttacttttgatgttaccttcagcaacttgtgcttcgcgcttatgaatttcaatagcttcagctttctgcttacgaatttcagctctctga 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34925378 cttctgccgcttacttttgatgttaccttcagcaacttcagcttcgcgcttacgaatttcaatagcttcagctttctgcttacgaatttcagctctctga 34925477  T
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34925478 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctccttctgctttcgaagttcagcagctttctgcttctgcttttgaactttagcag 34925577  T
Q  219 tttcctgctcttgaacttcggcagcttccgccttctgctttcgagcttcggcag 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  34925578 tttcctgctcttgaacttcggcagcttccgccttctgctttcgagtttcagcag 34925631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 34928624 - 34928803
Alignment:
Q  19 cttctgccgcttacttttgatgttaccttcagcaacttgtgcttcgcgcttatgaatttcaatagcttcagctttctgcttacgaatttcagctctctga 118  Q
    |||||||||||||||| ||||| | ||||||| |||||  |||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||     
T  34928624 cttctgccgcttacttctgatgatgccttcagaaacttcagcttcgtgcttacgaatttcaacagcttcagctttctgcttacgaacttcagctctctgc 34928723  T
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgctt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| |||| ||||||    
T  34928724 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctgcttcttctttcgaagttcagcggcttcctgctt 34928803  T

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Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 34929740 - 34929912
Alignment:
Q  19 cttctgccgcttacttttgatgttaccttcagcaacttgtgcttcgcgcttatgaatttcaatagcttcagctttctgcttacgaatttcagctctctga 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||||||| |||||| |||||||||||||||  ||||||||||||     
T  34929740 cttctgccgcttacttttgatgttaccttcagcaacttcagcttcacgcttacgaatttcaacagcttcggctttctgcttacgagcttcagctctctgc 34929839  T
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctt 191  Q
    |||||||||||||| ||||||||||| | || |||| | |||||||  ||  |||||||||||||||| ||||    
T  34929840 tttcgaagttcagcagctttctgctttcgaagttcaacggcttcctgctttagctttcgaagttcagcggctt 34929912  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 34935280 - 34935405
Alignment:
Q  19 cttctgccgcttacttttgatgttaccttcagcaacttgtgcttcgcgcttatgaatttcaatagcttcagctttctgcttacgaatttcagctctctga 118  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||||||| ||||||||||||||||||||||  ||||||||||||     
T  34935280 cttctgccgcttacttttgatgttaccttcagcaacttcagcttcacgcttacgaatttcaacagcttcagctttctgcttacgagcttcagctctctgc 34935379  T
Q  119 tttcgaagttcagcggctttctgctt 144  Q
    |||||||||||| |||||| ||||||    
T  34935380 tttcgaagttcaacggcttcctgctt 34935405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 34935410 - 34935544
Alignment:
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcag 218  Q
    ||||||||||||||||||| ||||||||  |||||||||||| |||  |||||||| |||| |||||| |||||||||||||||||| |||||||||| |    
T  34935410 tttcgaagttcagcggcttcctgcttacggacttcagcagctacctgcttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcgg 34935509  T
Q  219 tttc------ctgctcttgaacttcggcagcttcc 247  Q
    ||||      ||||||||||||||||||| |||||    
T  34935510 tttcatgtttctgctcttgaacttcggcaacttcc 34935544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 34929894 - 34930028
Alignment:
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcag 218  Q
    |||||||||||||||||||  |||||||  |||||||||||| |||  |||||||| |||| |||||| |||||||||||||||||| |||||||||| |    
T  34929894 tttcgaagttcagcggcttcttgcttacggacttcagcagctacctgcttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcgg 34929993  T
Q  219 tttc------ctgctcttgaacttcggcagcttcc 247  Q
    ||||      ||||||||||||||||||| |||||    
T  34929994 tttcatgtttctgctcttgaacttcggcaacttcc 34930028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 34928778 - 34928912
Alignment:
Q  119 tttcgaagttcagcggctttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcag 218  Q
    ||||||||||||||||||| |||||| | ||||||||| |||| ||  ||||| ||||||| |||||| |||||||||||||||||| |||||||||| |    
T  34928778 tttcgaagttcagcggcttcctgctttcgaacttcagcggctttctgcttctgttttcgaacttcagcggctttctgcttctgctttcgaacttcagcgg 34928877  T
Q  219 tttc------ctgctcttgaacttcggcagcttcc 247  Q
     |||      ||||||||||||||| |||||||||    
T  34928878 cttcctgtttctgctcttgaacttcagcagcttcc 34928912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 34928837 - 34928914
Alignment:
Q  148 aacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctg 225  Q
    ||||||||| |||| ||  ||||||||||||| |||||| |||| ||| ||||||| |||||||||||||| ||||||    
T  34928837 aacttcagcggctttctgcttctgctttcgaacttcagcggcttcctgtttctgctcttgaacttcagcagcttcctg 34928914  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 34928856 - 34928932
Alignment:
Q  137 ttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttc 213  Q
    |||||||| | ||||||||| ||||||| |||||||| | ||| ||||||||||| ||| ||||||| |||||||||    
T  34928856 ttctgctttcgaacttcagcggcttcctgtttctgctcttgaacttcagcagcttcctgtttctgctcttgaacttc 34928932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 34929942 - 34930042
Alignment:
Q  137 ttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgctcttgaactt 236  Q
    |||||||| | ||||||||| |||| ||  ||||||||||||| |||||| | ||  || ||||||| ||||||||| |||  ||||||||| |||||||    
T  34929942 ttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcggtttcatgtttctgctcttgaacttcggcaacttcctgctcatgaactt 34930041  T
Q  237 c 237  Q
    |    
T  34930042 c 34930042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 34935458 - 34935558
Alignment:
Q  137 ttctgcttacaaacttcagcagcttcctctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgctcttgaactt 236  Q
    |||||||| | ||||||||| |||| ||  ||||||||||||| |||||| | ||  || ||||||| ||||||||| |||  ||||||||| |||||||    
T  34935458 ttctgcttgcgaacttcagcggctttctgcttctgctttcgaacttcagcggtttcatgtttctgctcttgaacttcggcaacttcctgctcatgaactt 34935557  T
Q  237 c 237  Q
    |    
T  34935558 c 34935558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 267
Target Start/End: Original strand, 34928740 - 34928842
Alignment:
Q  165 ctttctgctttcgaagttcagcagctttctgcttctgcttttgaacttcagcagtttcctgctcttgaacttcggcagcttccgccttctgctttcgagc 264  Q
    |||||||||| | || ||||||||||| |||||||| |||| ||| |||||| | |||||||| | ||||||| || |||| |  |||||| |||||| |    
T  34928740 ctttctgcttacaaacttcagcagcttcctgcttcttctttcgaagttcagcggcttcctgctttcgaacttcagcggctttctgcttctgttttcgaac 34928839  T
Q  265 ttc 267  Q
    |||    
T  34928840 ttc 34928842  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 198
Target Start/End: Original strand, 34929835 - 34929865
Alignment:
Q  168 tctgctttcgaagttcagcagctttctgctt 198  Q
    |||||||||||||||||||||||||||||||    
T  34929835 tctgctttcgaagttcagcagctttctgctt 34929865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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