View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_18 (Length: 323)
Name: NF7240_high_18
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 35408436 - 35408116
Alignment:
| Q |
7 |
agaaggagtacctgccatccagcttcgatgctgttaagatcaggaccatcgaaagaaccagagaggacccaaatttgagagagactgaactcgttcatca |
106 |
Q |
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| T |
35408436 |
agaaggagtacctgccatccagcttcgatgctgttaagatcaggaccatcgaaagaaccagagaggacccaaatttgagagagactgaactcgttcatca |
35408337 |
T |
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| Q |
107 |
cttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtatgcgatcgcatgctgcacacgaacaaattt |
206 |
Q |
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| T |
35408336 |
cttcaattgatggatcccacacacttattgatgcttttgcaccgtagatctcttgtgatgatcctgtgtacgcgatcgcatgctgcacacgaacaaattt |
35408237 |
T |
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| Q |
207 |
tattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaata---ttatgatt-aaaaaacatttgtcaaat |
302 |
Q |
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| T |
35408236 |
tattttaattatttgagtacatataattagtgcaaagtcttcttccatcagaaatagtaaattactaatattattatgattaaaaaaacatttgtcaaat |
35408137 |
T |
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| Q |
303 |
cacaacagtgtttaacaaagt |
323 |
Q |
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| T |
35408136 |
cacaacaatgtttaacaaagt |
35408116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 48018850 - 48018981
Alignment:
| Q |
15 |
tacctgccatccagcttcgatgctgttaagatcaggaccatcgaaagaaccagagaggacccaaatttgagagagactgaactcgttcatcacttcaatt |
114 |
Q |
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| T |
48018850 |
tacctgccaaccagcttcaatgctattaagatctgagccaccaaaagatccagaaagaatccaaatttgagaaagactaaattcgttgactacttccacc |
48018949 |
T |
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| Q |
115 |
gatggatcccacacacttattgatgcttttgc |
146 |
Q |
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| T |
48018950 |
gttggatcccacacatttattgttgcttttgc |
48018981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 36692200 - 36692166
Alignment:
| Q |
13 |
agtacctgccatccagcttcgatgctgttaagatc |
47 |
Q |
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| T |
36692200 |
agtacctgccagccagcttcgatgctgttaagatc |
36692166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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