View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_21 (Length: 304)
Name: NF7240_high_21
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 287
Target Start/End: Complemental strand, 28773410 - 28773137
Alignment:
| Q |
13 |
atccccactataacggaatattctccctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcttac |
112 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28773410 |
atccccactataacggaatattcttcctgtgtccaaatttatgaaacactgcaatcataaattcaaattcaacattaaaaaatttatataacattcttac |
28773311 |
T |
|
| Q |
113 |
aattttaatagctgaaccagatataccatcaaacacataatcatgatcacttgttagcaaactgcaaaatataatgttttctttctttaagcaacatatc |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |
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| T |
28773310 |
aattttaatagctaaaccagatataccatcaaacacataatcttgatcacttgttagcaaactgcaaaataaaatgctttctttc-ttaagcaacatatc |
28773212 |
T |
|
| Q |
213 |
cacaattatattcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28773211 |
cacaattatattcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgat |
28773137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 28787293 - 28787121
Alignment:
| Q |
13 |
atccccactataacggaatattctccctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcttac |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28787293 |
atccccactataacggaatattcttcctgtgtccagatttatgaaacactgcaatcataaattcaaattcagcattaaaaaatttatataacattcatac |
28787194 |
T |
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| Q |
113 |
aattttaatagctgaaccagatataccatcaaacacataatcatgatcacttgttagcaaactgcaaaatata |
185 |
Q |
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| T |
28787193 |
aattttaacagccaaaccagataaaccatcaaacacataatcatgatcacctgttaacaaactgcaaaatata |
28787121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 28787114 - 28787049
Alignment:
| Q |
222 |
attcttaattacgttacaaacatattaaagaatcaacataattgattgatagatctgagcattgat |
287 |
Q |
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|||||||||||| |||| | ||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28787114 |
attcttaattactttactatcatatcaaagaattaacataattgattgatagatctgagcattgat |
28787049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 8828142 - 8828234
Alignment:
| Q |
66 |
atcataaattcaaattcagcattaaaaaatttatataacattcttacaattttaatagctgaaccagatataccatcaaacacataatcatga |
158 |
Q |
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||||||| |||||||||| |||||||| ||| ||| | || ||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8828142 |
atcataatttcaaattcattgttaaaaaaaatatgtaagaatcaaacatttttaatagccaaaccagatataccatcaaacacataatcatga |
8828234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 28822864 - 28822912
Alignment:
| Q |
238 |
caaacatattaaagaatcaacataattgattgatagatctgagcattga |
286 |
Q |
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||||||||| |||||||||||||||||||| || |||| ||||||||| |
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| T |
28822864 |
caaacatatcaaagaatcaacataattgatggacagattcgagcattga |
28822912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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