View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_23 (Length: 294)
Name: NF7240_high_23
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 50 - 278
Target Start/End: Original strand, 34433015 - 34433243
Alignment:
| Q |
50 |
tcacatttctcttctttgtcttgttcttgttttgtgcgtaattttcacattcattcatcactctcttcctcaaaacctccttctctttcaaattagggtt |
149 |
Q |
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| T |
34433015 |
tcacatttctcttctttgtcttgttcttgttttgtgcgtaattttcacattcattcatcgctctcttcctcaaaacctctttctctttcaaattagggtt |
34433114 |
T |
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| Q |
150 |
tcaaattcttccatttcctccaaattcaatatccaattcgatttcctcaccccttcaatccccactctccaatcgattaattccatctgcaccgatttca |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34433115 |
tcaaattcttccatttcctccaaattcaatatccaattcgatttcctcaccccttcaatccccactctccaatcgattaattccatctgcaccgatttca |
34433214 |
T |
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| Q |
250 |
gcttgattggtgtttacgagtgttgaaat |
278 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34433215 |
gcttgattggtgtttacgagtgttgaaat |
34433243 |
T |
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