View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_30 (Length: 267)
Name: NF7240_high_30
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 11646453 - 11646374
Alignment:
| Q |
174 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagacgatgtttattcaaattcagtgcataccacag |
253 |
Q |
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| T |
11646453 |
tgcaagttattcaacttaacttgttatttaaggaactcaaaaaagagactatgtttattcaaattcagtgcatactacag |
11646374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 11591158 - 11591206
Alignment:
| Q |
31 |
attttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
79 |
Q |
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| T |
11591158 |
attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11591206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 11646509 - 11646461
Alignment:
| Q |
31 |
attttcatcctttcaaacattaactgattattgaaaacaacagaacaat |
79 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11646509 |
attttcatcctttcaaacattaactgatcattgaaaacaacagaacaat |
11646461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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