View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_34 (Length: 239)
Name: NF7240_high_34
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15344863 - 15344640
Alignment:
| Q |
1 |
agcaatgaaaagcattaaactgacaggattgggcctgaacccttgacaaaagttatcacattacaacctataataaggcaaaccagaaccatctataaga |
100 |
Q |
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| T |
15344863 |
agcaatgaaaagcattaaactgacaggattgggcctgaacccttgtcaaaagttatcacattacaacctataataaggcagaccagaaccatctataaga |
15344764 |
T |
|
| Q |
101 |
aacaaatgaagaataaaagatggagggttattcccacattgtgatgagaacgtggatatgcatcagtcttatgcagagctatgggaaagaacatgttttt |
200 |
Q |
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| T |
15344763 |
aacaaatgaagaataaaagatggagggttattcccccattgtgatgagaatgtggatatgcatcagtcttatgcagagctatgggaaagaacatgtgttt |
15344664 |
T |
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| Q |
201 |
tgaaacgtgtcttcatcccttcct |
224 |
Q |
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| T |
15344663 |
tgaaacgtgtcttgatcccttcct |
15344640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31045751 - 31045708
Alignment:
| Q |
1 |
agcaatgaaaagcattaaactgacaggattgggcctgaaccctt |
44 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
31045751 |
agcaatgaaaagcattaaactaacaggattgggcctcaaccctt |
31045708 |
T |
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