View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_43 (Length: 223)
Name: NF7240_high_43
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 44865255 - 44865055
Alignment:
| Q |
10 |
agaacctgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcc |
109 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44865255 |
agaacttgtgtggaatgaacttacttgagtcaagattgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcc |
44865156 |
T |
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| Q |
110 |
cacagcaagctatatagtatcacgag-nnnnnnnnttagaaacttctttcgaattatacaaatttgatttcaggaaaaacataaacattggaggaaattt |
208 |
Q |
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| T |
44865155 |
cacagcaagctatatagtatcacgagaaaaaaaaattagaaacttctttcgaattatacaaatttgatttcaggaaaaacataaacattggaggaaattt |
44865056 |
T |
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| Q |
209 |
c |
209 |
Q |
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| T |
44865055 |
c |
44865055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 44851110 - 44850923
Alignment:
| Q |
18 |
tgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaa |
117 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44851110 |
tgtggaatgaacttacatgagtcaaaactgaacctttaagattctttagtctgccataaaaaagtaggtgttctctacctgtcaagctttcccacagcaa |
44851011 |
T |
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| Q |
118 |
gctatatagtatcacgagnnnnnnnnttagaaacttctttcgaattatac-aaatttgatttcaggaaaaacataaacattggaggaaatttc |
209 |
Q |
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| T |
44851010 |
ac--tatagtatcatgaagaaaagatttagaaacttctttcgattgatgcaaaatttgatttcagg---aacataaacattggaggaaatttc |
44850923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 44883134 - 44882937
Alignment:
| Q |
10 |
agaacctgtgtggaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcc |
109 |
Q |
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||||| |||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
44883134 |
agaacttgtgtggaatgaacttactttagtcaaggctgaaccttgaagatttttaagtctgccatagaaaagtaggtgctctctgcctgtcaagctttcc |
44883035 |
T |
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| Q |
110 |
cacagcaagctatatagtatcacgagnnnnnnnnttagaaacttctttcgaattatacaaatttgatttcaggaaaaacataaacattggaggaaatttc |
209 |
Q |
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| T |
44883034 |
cacagcaagc--tatagaatcatgagaaaaaaaattaaaaacttctttcaattgatataaatatgatttcaagataaacataaaaattgtaggaaatttc |
44882937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 44899945 - 44899846
Alignment:
| Q |
22 |
gaatgaacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
44899945 |
gaatgaacttacttgagtcaagactgaacctttaaggtttttaagtctaccataaaaaagtaggtgttctctacctgtcaaactttcccacagcaagcta |
44899846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 44839454 - 44839358
Alignment:
| Q |
27 |
aacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctata |
123 |
Q |
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|||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44839454 |
aacttacttgagtcaagattgaacctgtaaggtttttaagtcttccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagctata |
44839358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 44899804 - 44899768
Alignment:
| Q |
166 |
acaaatttgatttcaggaaaaacataaacattggagg |
202 |
Q |
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| T |
44899804 |
acaaattggatttcaagaaaaacataaacattggagg |
44899768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 12925382 - 12925476
Alignment:
| Q |
27 |
aacttacttgagtcaagactgaacctttaagatttttcagtctgccataaaaaagtaggtgctctctacctgtcaagctttcccacagcaagcta |
121 |
Q |
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|||||||||| || ||| | ||||||||||||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
12925382 |
aacttacttgtgttaaggcagaacctttaagatttttaagtctgccgtaaaagagtagatgctctcttcctgtcaagatttcccacagcaagcta |
12925476 |
T |
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