View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_6 (Length: 437)
Name: NF7240_high_6
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 7723358 - 7722964
Alignment:
| Q |
1 |
caagtgaaagagtacaatcaacagaagaagatgaagaattcggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggagaataacat |
100 |
Q |
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| T |
7723358 |
caagtgaaagagtacaatcaacagaagaagatgaagaattaggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggagaataacat |
7723259 |
T |
|
| Q |
101 |
tgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaaagag |
200 |
Q |
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| T |
7723258 |
tgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtgaaaaagag |
7723159 |
T |
|
| Q |
201 |
taatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgtcgaa |
300 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7723158 |
taatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaaatgtcgaa |
7723069 |
T |
|
| Q |
301 |
atactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaattataga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7723068 |
atactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaaattataaa |
7722969 |
T |
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