View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_high_7 (Length: 421)
Name: NF7240_high_7
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 76 - 408
Target Start/End: Original strand, 15345134 - 15345466
Alignment:
| Q |
76 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattaaaaaacacaggcacaaacgcaaatataa |
175 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15345134 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa |
15345233 |
T |
|
| Q |
176 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
275 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
15345234 |
accctaaaaaccttatgtatggaacatgaatcaggagttagcgctgaagaaggtaacagaacttacaagaattgaaaacggagaattggagaagaacata |
15345333 |
T |
|
| Q |
276 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
375 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15345334 |
gagtttggaggccgtcgagagcgaacgtgacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctccccctactgaattgattgaa |
15345433 |
T |
|
| Q |
376 |
gaaggtaaagttattgaaggcaaaattcttctc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
15345434 |
gaaggtaaagttattgaaggcaaaattcttctc |
15345466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 15345068 - 15345107
Alignment:
| Q |
38 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
77 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15345068 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
15345107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 76 - 408
Target Start/End: Original strand, 40504153 - 40504485
Alignment:
| Q |
76 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattaaaaaacacaggcacaaacgcaaatataa |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
40504153 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacttggaattgaaaaacacaggcacaaacgcaaatataa |
40504252 |
T |
|
| Q |
176 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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| T |
40504253 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaacttacaagaatcgaaaatggagaattggagaagaacggt |
40504352 |
T |
|
| Q |
276 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
375 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40504353 |
gagtttgaaggctgtcgagagcgaacgagacgtgatacaaagagagatagagagtcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
40504452 |
T |
|
| Q |
376 |
gaaggtaaagttattgaaggcaaaattcttctc |
408 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |
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|
| T |
40504453 |
gaaggtaaagtgattgaatgcaaaattcttctc |
40504485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 40504087 - 40504126
Alignment:
| Q |
38 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
40504087 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
40504126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 79 - 408
Target Start/End: Complemental strand, 24706335 - 24706006
Alignment:
| Q |
79 |
catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattaaaaaacacaggcacaaacgcaaatataaacc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
24706335 |
catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaagcacaaacgcaaatataaacc |
24706236 |
T |
|
| Q |
179 |
ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagggag |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| ||| |
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| T |
24706235 |
ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacaaaacttacaagaatcgaaaacagagaattggagaagaacagagag |
24706136 |
T |
|
| Q |
279 |
tttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaagaa |
378 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24706135 |
tttgaaggccgtcgagagcgaacgagacgtgagacaaagagagatagagagtcgcgagcatcaataacccctttttcaccctactgaattgattgaagaa |
24706036 |
T |
|
| Q |
379 |
ggtaaagttattgaaggcaaaattcttctc |
408 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
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|
| T |
24706035 |
ggtaaagtgattgatggcaaaattcttctc |
24706006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 24706404 - 24706365
Alignment:
| Q |
38 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
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| T |
24706404 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
24706365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 76 - 408
Target Start/End: Complemental strand, 22108045 - 22107730
Alignment:
| Q |
76 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattaaaaaacacaggcacaaacgcaaatataa |
175 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||| ||||||| |||||||||| ||||||||| |
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| T |
22108045 |
cagcatcaaacattgaacaagcctaatttaaatcgacattgaacattaaacacg--------catggaattgaaaaacataggcacaaacacaaatataa |
22107954 |
T |
|
| Q |
176 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
275 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
22107953 |
accctaataaccttttgtatggaatatgaatcaggagttagcgttgaagaaggtgacataacttacaagaatcgaaaacggagaattggagaagaacaaa |
22107854 |
T |
|
| Q |
276 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
375 |
Q |
| |
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||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22107853 |
gagtttgaaggccgacgagagcgaacgagacgtgagacaaaaagagata---------gagcatcaataacccctttctcaccctactgaattgattgaa |
22107763 |
T |
|
| Q |
376 |
gaaggtaaagttattgaaggcaaaattcttctc |
408 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22107762 |
gaaggtaaagtgattgaaggcgaaattcttctc |
22107730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 22108111 - 22108072
Alignment:
| Q |
38 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22108111 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
22108072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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