View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7240_high_9 (Length: 382)
Name: NF7240_high_9
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 39261093 - 39260725
Alignment:
| Q |
1 |
tttctgtggtcaattaggtagacccagaaattctcactttccatttgccccacctatacagcaactttttatcacatatagtatatagtattactaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39261093 |
tttctgtggtcaattaggtagacccagaaattctcactttccatttgccccacctatacagcaactttttatcacatatagtatatagtattactaaaat |
39260994 |
T |
|
| Q |
101 |
tgataagaaacaaaatctagtatgataaataaaagtaattgatgnnnnnnn-cacactaaggtatcccgtgaactctcctctttcacagttcagttattc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39260993 |
tgataagaaacaaaatctagtatgataaataaaagtaattgatgaaaaaaaacacactaaggtatcccgtgaactctcctctttcacagttcagttattc |
39260894 |
T |
|
| Q |
200 |
aacaccccaccccctcacaaactcaagaaaaaagtttttcagcataaaagtcttattcttccaagtgactttagaatattgaatttgaatgatttgg-tt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
39260893 |
aacaccccaccccctcacaaactcaagaaaaaagtttttcagcataaaagtcttattcttccaagtgactttagaatattgaatttgaatgattaggttt |
39260794 |
T |
|
| Q |
299 |
ttttattatttaaggaagttttgtaattatgcattgatggtccaaatgaatttttctgtctttattaat |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39260793 |
ttttattatttaaggaagttttgtaattatgcattgatggtccaaatgaatttttctgtctttattaat |
39260725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University