View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_1 (Length: 902)

Name: NF7240_low_1
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_1
NF7240_low_1
[»] chr4 (22 HSPs)
chr4 (42-788)||(49576924-49577671)
chr4 (252-408)||(4289822-4289978)
chr4 (252-408)||(39598852-39599008)
chr4 (252-406)||(2588236-2588390)
chr4 (252-408)||(16497453-16497609)
chr4 (252-406)||(5650486-5650640)
chr4 (253-340)||(52249337-52249424)
chr4 (252-341)||(55911343-55911433)
chr4 (252-338)||(16497714-16497800)
chr4 (749-787)||(55427231-55427269)
chr4 (749-788)||(19238607-19238646)
chr4 (749-788)||(37109381-37109420)
chr4 (749-788)||(37720244-37720283)
chr4 (749-788)||(51250552-51250591)
chr4 (514-583)||(9815407-9815475)
chr4 (798-842)||(8030168-8030212)
chr4 (324-408)||(11157107-11157191)
chr4 (749-788)||(9241055-9241094)
chr4 (749-788)||(27965540-27965579)
chr4 (749-788)||(29195102-29195141)
chr4 (330-408)||(14066498-14066576)
chr4 (751-788)||(39030143-39030180)
[»] chr1 (22 HSPs)
chr1 (252-407)||(47523877-47524032)
chr1 (252-407)||(50204711-50204865)
chr1 (252-408)||(18990084-18990240)
chr1 (251-388)||(33966837-33966974)
chr1 (294-362)||(43866439-43866508)
chr1 (749-788)||(9165225-9165264)
chr1 (749-788)||(40257406-40257445)
chr1 (749-788)||(52116811-52116850)
chr1 (798-842)||(6122862-6122906)
chr1 (744-788)||(17410233-17410277)
chr1 (791-842)||(3799967-3800018)
chr1 (749-788)||(15581171-15581210)
chr1 (749-788)||(16170008-16170047)
chr1 (749-788)||(31794294-31794333)
chr1 (749-788)||(36371477-36371516)
chr1 (749-788)||(44126402-44126441)
chr1 (754-787)||(1690108-1690141)
chr1 (749-782)||(17745292-17745325)
chr1 (749-778)||(19528367-19528396)
chr1 (749-786)||(21547512-21547549)
chr1 (752-785)||(28022158-28022191)
chr1 (749-786)||(48400179-48400216)
[»] chr5 (17 HSPs)
chr5 (252-410)||(7992129-7992287)
chr5 (252-366)||(5240651-5240765)
chr5 (253-398)||(10916856-10917001)
chr5 (285-406)||(28276947-28277068)
chr5 (253-353)||(41377630-41377729)
chr5 (255-366)||(41106735-41106846)
chr5 (251-326)||(43280947-43281022)
chr5 (749-787)||(21589295-21589333)
chr5 (749-788)||(21549167-21549206)
chr5 (262-366)||(42132373-42132478)
chr5 (749-789)||(7918498-7918538)
chr5 (752-788)||(16457820-16457856)
chr5 (798-842)||(28285320-28285364)
chr5 (487-542)||(6102671-6102726)
chr5 (749-788)||(30109338-30109377)
chr5 (749-788)||(30883228-30883267)
chr5 (809-842)||(18206610-18206643)
[»] chr8 (27 HSPs)
chr8 (252-408)||(29168251-29168406)
chr8 (252-406)||(1548347-1548501)
chr8 (252-408)||(3376073-3376227)
chr8 (252-408)||(23033585-23033741)
chr8 (252-407)||(34784243-34784398)
chr8 (252-407)||(3117913-3118068)
chr8 (253-409)||(20900977-20901134)
chr8 (252-346)||(1469108-1469203)
chr8 (348-408)||(3277751-3277811)
chr8 (753-788)||(968373-968408)
chr8 (749-788)||(2203499-2203538)
chr8 (749-788)||(3624587-3624626)
chr8 (749-788)||(16852347-16852386)
chr8 (749-788)||(18540305-18540344)
chr8 (253-298)||(3277701-3277746)
chr8 (749-785)||(23874415-23874451)
chr8 (749-788)||(6530814-6530853)
chr8 (749-788)||(8485006-8485045)
chr8 (749-788)||(19703517-19703556)
chr8 (749-788)||(20994488-20994527)
chr8 (749-788)||(22268963-22269002)
chr8 (749-788)||(26688872-26688911)
chr8 (749-788)||(28783067-28783106)
chr8 (749-788)||(29431018-29431057)
chr8 (749-788)||(29858079-29858118)
chr8 (749-787)||(32157198-32157236)
chr8 (270-340)||(36881725-36881794)
[»] chr3 (20 HSPs)
chr3 (252-408)||(53208429-53208585)
chr3 (749-891)||(9832504-9832647)
chr3 (252-408)||(9454826-9454982)
chr3 (262-409)||(7227292-7227439)
chr3 (252-406)||(32130366-32130520)
chr3 (264-408)||(7323058-7323202)
chr3 (252-408)||(50064074-50064230)
chr3 (790-842)||(8075091-8075143)
chr3 (749-788)||(2667869-2667908)
chr3 (749-788)||(16991549-16991588)
chr3 (749-783)||(8051221-8051255)
chr3 (749-787)||(10499140-10499178)
chr3 (749-788)||(17554778-17554817)
chr3 (745-788)||(21960554-21960597)
chr3 (749-788)||(31520635-31520674)
chr3 (753-788)||(32651468-32651503)
chr3 (749-788)||(42799777-42799816)
chr3 (750-788)||(12761520-12761558)
chr3 (749-787)||(26871535-26871573)
chr3 (749-786)||(3055001-3055038)
[»] chr2 (23 HSPs)
chr2 (252-408)||(36536125-36536281)
chr2 (252-407)||(44673371-44673526)
chr2 (253-408)||(25438500-25438655)
chr2 (254-408)||(37154589-37154736)
chr2 (252-362)||(42975646-42975756)
chr2 (263-396)||(41714898-41715031)
chr2 (330-408)||(33391758-33391836)
chr2 (252-355)||(40712579-40712679)
chr2 (749-788)||(37480082-37480121)
chr2 (749-788)||(42327425-42327464)
chr2 (749-788)||(42602561-42602600)
chr2 (750-788)||(21213777-21213815)
chr2 (752-788)||(23052553-23052589)
chr2 (749-785)||(37756004-37756040)
chr2 (749-788)||(7799065-7799104)
chr2 (753-788)||(12086159-12086194)
chr2 (749-788)||(25931013-25931052)
chr2 (292-346)||(26377567-26377624)
chr2 (749-788)||(29503278-29503317)
chr2 (749-788)||(39714999-39715038)
chr2 (749-788)||(42922421-42922460)
chr2 (352-406)||(26377615-26377669)
chr2 (300-353)||(950544-950597)
[»] chr6 (17 HSPs)
chr6 (262-408)||(13425442-13425588)
chr6 (253-396)||(18133658-18133801)
chr6 (263-396)||(23889798-23889931)
chr6 (252-408)||(25100779-25100936)
chr6 (289-378)||(6539318-6539407)
chr6 (324-396)||(10875612-10875684)
chr6 (749-788)||(12188333-12188372)
chr6 (749-788)||(21418477-21418516)
chr6 (749-788)||(33549111-33549150)
chr6 (752-788)||(12234537-12234573)
chr6 (744-788)||(13441052-13441096)
chr6 (798-842)||(20213109-20213153)
chr6 (798-842)||(22107132-22107176)
chr6 (749-784)||(6776641-6776676)
chr6 (749-788)||(10338204-10338243)
chr6 (799-842)||(14199911-14199954)
chr6 (749-788)||(31623021-31623060)
[»] chr7 (30 HSPs)
chr7 (252-408)||(12858969-12859125)
chr7 (253-408)||(32775375-32775530)
chr7 (252-408)||(36167472-36167628)
chr7 (253-408)||(19886776-19886931)
chr7 (287-378)||(46082238-46082329)
chr7 (266-406)||(5465442-5465574)
chr7 (252-408)||(19780831-19780991)
chr7 (344-408)||(11599454-11599518)
chr7 (252-324)||(46082338-46082410)
chr7 (744-788)||(15905703-15905747)
chr7 (749-788)||(25021365-25021404)
chr7 (749-788)||(26459440-26459479)
chr7 (749-788)||(30579342-30579381)
chr7 (749-788)||(41487369-41487408)
chr7 (749-788)||(42836031-42836070)
chr7 (749-788)||(43590914-43590953)
chr7 (749-787)||(39631851-39631889)
chr7 (752-785)||(11720993-11721026)
chr7 (749-790)||(22932739-22932780)
chr7 (798-842)||(33181174-33181218)
chr7 (744-788)||(45976953-45976997)
chr7 (749-788)||(7801187-7801226)
chr7 (749-788)||(19553461-19553499)
chr7 (749-788)||(22760870-22760909)
chr7 (749-788)||(23301632-23301671)
chr7 (749-788)||(25956322-25956361)
chr7 (299-338)||(32368238-32368277)
chr7 (749-788)||(39499749-39499788)
chr7 (749-788)||(48771945-48771984)
chr7 (749-787)||(30442495-30442533)
[»] scaffold0325 (1 HSPs)
scaffold0325 (252-408)||(8549-8706)
[»] scaffold0302 (1 HSPs)
scaffold0302 (253-408)||(17295-17450)
[»] scaffold0768 (1 HSPs)
scaffold0768 (252-361)||(4394-4501)
[»] scaffold0258 (1 HSPs)
scaffold0258 (749-788)||(15353-15392)
[»] scaffold0299 (1 HSPs)
scaffold0299 (749-788)||(11535-11574)
[»] scaffold0101 (1 HSPs)
scaffold0101 (749-788)||(43362-43401)
[»] scaffold0070 (1 HSPs)
scaffold0070 (744-787)||(38933-38976)
[»] scaffold0002 (1 HSPs)
scaffold0002 (749-788)||(95001-95040)
[»] scaffold0955 (1 HSPs)
scaffold0955 (744-781)||(3465-3502)
[»] scaffold0417 (1 HSPs)
scaffold0417 (749-790)||(10226-10267)


Alignment Details
Target: chr4 (Bit Score: 684; Significance: 0; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 42 - 788
Target Start/End: Complemental strand, 49577671 - 49576924
Alignment:
Q  42 agaccgaattacaattccgaatgggatcatatcaacaacattttactgcaagtctctattctaactaggggtctatacggaaacgtaaggtcagtactcc 141  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49577671 agaccgaattacaattccgaatgggatcatatcaacaacatattaatgcaagtctctattctaactaggggtctgtacggaaacgtaaggtcagtactcc 49577572  T
Q  142 aaaagcacaagaatgagttcctataacgaccgagcgagcctatggtggctgaccaagaagtcagcctacctgaggatacccacgcgactgaccaggagag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49577571 aaaagcacaagaatgagttcctataacgaccgagcgagcctatggtggccgaccaagaagtcagcctacctgaggatacccacgcgactgaccaggagag 49577472  T
Q  242 acattaatcccttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacg 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49577471 acattaatcccttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaactgtgttacg 49577372  T
Q  342 ttcctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattgttcatagtcatacagttacaaccctggatttga 441  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49577371 ttcctcgtgtttacattctttcaccggccgaccgatcctacgtaggatctcgatcatgactacattgttcatagtcatacagttacaaccctggatttga 49577272  T
Q  442 atcataacaacagtgttacagcaacgcgccacctcttcacgcttctccctctcctgctatgtttcttcactcctaaaactgtgagaaagggttatctgaa 541  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49577271 atcataacaacagtgttacagcaacgcgccacctcttcatgcttctccctctcctgctatgtttcttcactcctaaaactgtgagaaagggttatctgaa 49577172  T
Q  542 cttcatcttctactactctgcactttgtcctcccttattctttctactactttgtcagcttcttcttcctcaatgttgcattaaacagcacctcagtaag 641  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49577171 cttcatcttctactactctgcactttgtcttcccttgttctttctactactttgtcagcttcttcttcctcaatgttgcattaaacagcaccttagtaag 49577072  T
Q  642 ttttcatgggtgaagcggctgctttgactgagttatcatcgctccgctccaccgatatcttttattgggtgaatatcgacaata-ttgactgcaattctc 740  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  49577071 ttttcatgggtgaagcggctgctttgactgaattatcatcgctccgctccaccgatatcttttattgggtgaagatcgacaatatttgactgcaattctc 49576972  T
Q  741 tattccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  49576971 tattccaattgggttggcctggtggtattggctttggacttgggagtg 49576924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 4289978 - 4289822
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  4289978 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgggttacgttcctcgtgt 4289879  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||  |||||||| ||||| ||||||| ||||||||||||||||  |||||||||||    
T  4289878 ttaagttctttcaacggccaaccgatcctacgtaggatctcgatactgactacattg 4289822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 39599008 - 39598852
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  39599008 cttggttcctctgttttccctctattttctctatctatttcgctcaactctgtcaacaacctaccgatcctacttacgaacagtgctacgttcctcgtgt 39598909  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| ||||||||| | |||||||||| ||| ||||||||||||| |||||||||||    
T  39598908 ttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactacattg 39598852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 252 - 406
Target Start/End: Complemental strand, 2588390 - 2588236
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  2588390 cttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 2588291  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    |||| |||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  2588290 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 2588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 16497609 - 16497453
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||| ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  16497609 cttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 16497510  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||||||||||||||||| ||||||||| |||| || |||||||||||    
T  16497509 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 16497453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 252 - 406
Target Start/End: Complemental strand, 5650640 - 5650486
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||    
T  5650640 cttggttcctttgttttccctctattttccctatatatttctctcaattctatcgacagcctatcgatcctacttacgaaccgtgttacgttcctcgtgt 5650541  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    |||| |||||||||||||||||||||| || |||||| |||| || |||||||||    
T  5650540 ttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 52249424 - 52249337
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttac 340  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||| | ||||||||||||    
T  52249424 ttggttcctctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccgtgttac 52249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 55911343 - 55911433
Alignment:
Q  252 cttggttcctctgttttccctctattttctcta--tctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacg 341  Q
    ||||||||||||||||||||||||||||||||   | ||||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  55911343 cttggttcctctgttttccctctattttctctggttttattt-tctcaactctatcaacaacctaccgatcctacttataaatcgtgttacg 55911433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 16497800 - 16497714
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgtt 338  Q
    ||||| ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||||||||||    
T  16497800 cttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgtt 16497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 749 - 787
Target Start/End: Complemental strand, 55427269 - 55427231
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||||||||||||||||||||||||||||||    
T  55427269 ttgggttggcctggtggtattggcttgggacctgggagt 55427231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 19238646 - 19238607
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  19238646 ttgggttggcctggtggtattggcttgggacttgggagtg 19238607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 37109420 - 37109381
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  37109420 ttgggttggcctagtggtattggcttgggacctgggagtg 37109381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 37720283 - 37720244
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  37720283 ttgggttggcctggtgttattggcttgggacctgggagtg 37720244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 51250591 - 51250552
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  51250591 ttgggttggcctggtggtattggcttgggatctgggagtg 51250552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 583
Target Start/End: Original strand, 9815407 - 9815475
Alignment:
Q  514 ctaaaactgtgagaaagggttatctgaacttcatcttctactactctgcactttgtcctcccttattctt 583  Q
    |||||| |||||||||||||||| |||| |||||||| || |||| ||||||||||||| |||| |||||    
T  9815407 ctaaaattgtgagaaagggttatttgaa-ttcatcttttattactatgcactttgtccttccttcttctt 9815475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Complemental strand, 8030212 - 8030168
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  8030212 gttcgattccctctagtgtcaatttgggtgggctaatttagcttc 8030168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 11157107 - 11157191
Alignment:
Q  324 cttatgaaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||||||||||||||||||||| ||  ||||| | | |||||||||||| ||| | ||||||| | |||| || |||||||||||    
T  11157107 cttatgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattg 11157191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 9241094 - 9241055
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  9241094 ttgggttggcctggtggtattggcttgggatctggtagtg 9241055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 27965579 - 27965540
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  27965579 ttgggttggcctagtggtattggcttgggatctgggagtg 27965540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 29195102 - 29195141
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  29195102 ttgggttggcctggtggtgttggcttgggaccttggagtg 29195141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 14066576 - 14066498
Alignment:
Q  330 aaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||||| |||||||||||||||||||||  || |   |||||| |||| ||| ||||||||||||| |||||| ||||    
T  14066576 aaccgtgatacgttcctcgtgtttacatttctttattagccgactgatcctacttaggatctcgatcctgactatattg 14066498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 788
Target Start/End: Complemental strand, 39030180 - 39030143
Alignment:
Q  751 gggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  39030180 gggttggcctggtggtgttggcttgggaccttggagtg 39030143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 6e-61; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 47523877 - 47524032
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  47523877 cttggttcctctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgt 47523976  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacatt 407  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  47523977 ttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 47524032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 50204711 - 50204865
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||| |||||||||||||| | | |||| |||||||||||||||||||||| |||| |||||| ||| |||||||||  |||| |||    
T  50204711 cttggttcctctgtttttcctctattttctctgttt-tttcactcaactctatcaacaacctactgatcttacttacgaagcgtgttacgaccctcatgt 50204809  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacatt 407  Q
    ||||| ||||||||| ||| ||||||| ||| ||  | ||||| | ||||||||||    
T  50204810 ttacaatctttcaccagcctaccgatcctacttaaaaactcgaacctgactacatt 50204865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 18990240 - 18990084
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||| | |||||| |||||||||| |||   ||||||||||||||||||||||||||||||||||| || ||  |||| ||||| ||||||||| |    
T  18990240 cttggttcttgtgtttttcctctattttatcttattatttctctcaactctatcaacaacctaccgatccaacatacaaaccatgttatgttcctcgtat 18990141  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| ||| ||||||||||| || | | ||||| ||||||| ||| | |||||||||    
T  18990140 ttacgttccttcaccggccgtcctaccctacgtgggatctcaatcctaactacattg 18990084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 33966837 - 33966974
Alignment:
Q  251 ccttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtg 350  Q
    ||||| |||||||||| | ||||||| | || | | ||| ||||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||      
T  33966837 ccttgattcctctgttattcctctatatgctatgtttatatctctcaactctatcaataacctaccgatcctacttacgaactgtgttacattcctcgct 33966936  T
Q  351 tttacattctttcaccggccgaccgatcatacgtagga 388  Q
    ||||| ||| |||||||||| || |||| |||||||||    
T  33966937 tttacgttccttcaccggcctactgatcctacgtagga 33966974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 43866439 - 43866508
Alignment:
Q  294 ctcaactctatcaacaac-ctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattcttt 362  Q
    |||||||||||||| ||  |||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  43866439 ctcaactctatcaaaaaagctactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttcttt 43866508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 9165264 - 9165225
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9165264 ttgggttggcctagtggtattggcttgggacctgggagtg 9165225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 40257406 - 40257445
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  40257406 ttgggttggcctggtggtattggcttgagacctgggagtg 40257445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 52116850 - 52116811
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtg 52116811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Original strand, 6122862 - 6122906
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  6122862 gttcgattccctctagtgtcaatttgggtgggctaatttagcttc 6122906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 788
Target Start/End: Original strand, 17410233 - 17410277
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||| |||||||||| |||||| |||||||||    
T  17410233 tccaattgggttggcctagtggtattggtttgggatctgggagtg 17410277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 791 - 842
Target Start/End: Original strand, 3799967 - 3800018
Alignment:
Q  791 gtttcatgttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||| |||||||||  |||||||||||||| |||||| ||||||||||||    
T  3799967 gtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttc 3800018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 15581210 - 15581171
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  15581210 ttgggttggcctggtggtgttggcttgggaccttggagtg 15581171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 16170047 - 16170008
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  16170047 ttgggttagcctggtggtattgacttgggacctgggagtg 16170008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 31794333 - 31794294
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  31794333 ttgggttggcctagtggtattggcttgggacttgggagtg 31794294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 36371477 - 36371516
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  36371477 ttgggttggcctagtggtattggcttggaacctgggagtg 36371516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 44126402 - 44126441
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  44126402 ttgggttggcctggtggtattgacctgggacctgggagtg 44126441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 787
Target Start/End: Complemental strand, 1690141 - 1690108
Alignment:
Q  754 ttggcctggtggtattggcttgggacctgggagt 787  Q
    |||| |||||||||||||||||||||||||||||    
T  1690141 ttggtctggtggtattggcttgggacctgggagt 1690108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 782
Target Start/End: Complemental strand, 17745325 - 17745292
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctg 782  Q
    |||||||||||| |||||||||||||||||||||    
T  17745325 ttgggttggcctagtggtattggcttgggacctg 17745292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 778
Target Start/End: Complemental strand, 19528396 - 19528367
Alignment:
Q  749 ttgggttggcctggtggtattggcttggga 778  Q
    ||||||||||||||||||||||||||||||    
T  19528396 ttgggttggcctggtggtattggcttggga 19528367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Complemental strand, 21547549 - 21547512
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggag 786  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  21547549 ttgggttggcctagtggtattggcttgggacatgggag 21547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 28022191 - 28022158
Alignment:
Q  752 ggttggcctggtggtattggcttgggacctggga 785  Q
    ||||| ||||||||||||||||||||||||||||    
T  28022191 ggttgtcctggtggtattggcttgggacctggga 28022158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 48400179 - 48400216
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggag 786  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  48400179 ttgggttggcctgatggtattggcttgggaccttggag 48400216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 252 - 410
Target Start/End: Complemental strand, 7992287 - 7992129
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  7992287 cttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 7992188  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattgtt 410  Q
    |||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  7992187 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcatgactacattgtt 7992129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 5240651 - 5240765
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||    
T  5240651 cttggttcctatgtttttcctctatttttactatctatttctctcaactctatcaacaacctactgatcctacttatgaaccatgttacatccctcgtgt 5240750  T
Q  352 ttacattctttcacc 366  Q
    ||| |||||||||||    
T  5240751 ttaaattctttcacc 5240765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 253 - 398
Target Start/End: Complemental strand, 10917001 - 10916856
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| || ||| |||  |||||||| || ||||||||||||||||||||    
T  10917001 ttggttcctatgtttttcctctattttctctatatatttctctcaactctatcaataatctatcgactctacttataaaacgtgttacgttcctcgtgtt 10916902  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatcat 398  Q
    ||  ||||||||||||||||   ||  |||||||||||||||||||    
T  10916901 tatgttctttcaccggccgattaattctacgtaggatctcgatcat 10916856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 28276947 - 28277068
Alignment:
Q  285 tctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcatacgt 384  Q
    |||||||||||| | |||||||||||||||  ||||||||||| |||| |||||||||||||||| ||||| |||||||||||||| | ||||| |||||    
T  28276947 tctatttctctctattctatcaacaacctattgatcctacttacgaactgtgttacgttcctcgtatttacgttctttcaccggccaatcgatcctacgt 28277046  T
Q  385 aggatctcgatcatgactacat 406  Q
    |||||||| ||| |||||||||    
T  28277047 aggatctcaatcctgactacat 28277068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 41377729 - 41377630
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||||||||||||| | |||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||    
T  41377729 ttggttcctctgttattcctctattttctctgttt-tttctctcaactctatcaacaacctaccaatcctacttacaaatcgtgttacgttcctcgtgtt 41377631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 41106735 - 41106846
Alignment:
Q  255 ggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgttta 354  Q
    ||||||||||||||||||||||||||||  | | ||| ||||||||||||||||||||||| ||||||||||| ||| ||||||| |  ||| |||||||    
T  41106735 ggttcctctgttttccctctattttctcagtttttttttctcaactctatcaacaacctacggatcctacttacgaatcgtgttatggcccttgtgttta 41106834  T
Q  355 cattctttcacc 366  Q
    || |||||||||    
T  41106835 caatctttcacc 41106846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 43281022 - 43280947
Alignment:
Q  251 ccttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctactt 326  Q
    |||||||||||||||||| |||| ||||||||| | | ||||| |||||||||||||||||||||||||| |||||    
T  43281022 ccttggttcctctgtttttcctcaattttctctgtttttttctttcaactctatcaacaacctaccgatcatactt 43280947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 749 - 787
Target Start/End: Original strand, 21589295 - 21589333
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21589295 ttgggttggcctggtggtattggcttgggacctgggagt 21589333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 21549206 - 21549167
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  21549206 ttgggttggcctagtggtattggcttgggacctgggagtg 21549167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 366
Target Start/End: Complemental strand, 42132478 - 42132373
Alignment:
Q  262 ctgttttccctctattttctctatctatttc-tctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattct 360  Q
    |||||||  ||||||||||||||| | |||| |||||||||||||||| |||||| ||||| |||||| || |||| || |  |||| |||||||| ||     
T  42132478 ctgttttttctctattttctctatttttttcctctcaactctatcaactacctactgatccgacttattaatcgtgatatgaccctcatgtttacaatca 42132379  T
Q  361 ttcacc 366  Q
    ||||||    
T  42132378 ttcacc 42132373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 749 - 789
Target Start/End: Complemental strand, 7918538 - 7918498
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtgc 789  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  7918538 ttgggttggcctagtggtattggcttggaacctgggagtgc 7918498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 788
Target Start/End: Original strand, 16457820 - 16457856
Alignment:
Q  752 ggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||| ||||||    
T  16457820 ggttggcctggtggtattggcttgggaccttggagtg 16457856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Original strand, 28285320 - 28285364
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||||    
T  28285320 gttcgattctttctagtgtcaatttgggtgggctaatttagcttc 28285364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 6102726 - 6102671
Alignment:
Q  487 tccctctcctgctatgtttcttcactcctaaaactgtgagaaagggttatctgaac 542  Q
    |||||||||| || | |||||||||||||||| | |||| ||||||||||||||||    
T  6102726 tccctctcctactctttttcttcactcctaaaccagtgataaagggttatctgaac 6102671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 30109377 - 30109338
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  30109377 ttgggttggcttggtggtattggcttgtgacctgggagtg 30109338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 30883267 - 30883228
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  30883267 ttgggttggtctagtggtattggcttgggacctgggagtg 30883228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 842
Target Start/End: Complemental strand, 18206643 - 18206610
Alignment:
Q  809 tctagtgccaatttgggtggggtaatttagcttc 842  Q
    ||||||||||||||||||||| ||||||||||||    
T  18206643 tctagtgccaatttgggtgggctaatttagcttc 18206610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 1e-56; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 29168406 - 29168251
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  29168406 cttggttcctctgtttcccc-ctattttctctatctatctctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcatgt 29168308  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||||||||||||||||| || |||||||||| ||| |||||||||||    
T  29168307 ttacgttctttcaccggccgaccgatcctatgtaggatctctatcctgactacattg 29168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 1548347 - 1548501
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  1548347 cttggttcccctgttttccctctattttccctatacatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 1548446  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    |||| |||||||||||||||||||||| ||||||||| |||| || |||||||||    
T  1548447 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 3376227 - 3376073
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3376227 cttggttcctctgtttttcctctatt--ctctatctatttatctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcgtgt 3376130  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||| |||| |||||| | |||||||||||| |||| |||||||||||    
T  3376129 ttacgttctttcatcggcggaccgaacctacgtaggatcttgatcctgactacattg 3376073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 23033585 - 23033741
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||| |||||  |||||||| |||||||||||| |||||||||||||||||||||||    
T  23033585 cttggttcccctgttttccctctattttccctatatatttctctcaattctattgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 23033684  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||||||||||||||| | ||||||||| |||| || |||||||||||    
T  23033685 ttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacattg 23033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 34784398 - 34784243
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||| ||||||| |||| |||||||||||| |||||| |||||||| ||||||||||||  ||||||||||||||||||||||    
T  34784398 cttggttcccctgttttccctatattttccctatatatttctctcaattctatcgacaacctaacgatcctacttacaaaccgtgttacgttcctcgtgt 34784299  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacatt 407  Q
    |||  |||||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  34784298 ttatgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 34784243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 3117913 - 3118068
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||| ||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||||| |||||||||||||||||    
T  3117913 cttggttcccctgctttccctctattttccctatatatttctctcaattctatctacaacctatcgatcctacttacgaaccatgttacgttcctcgtgt 3118012  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacatt 407  Q
    |||| |||||||||||||||||| ||| || |||||| |||| || ||||||||||    
T  3118013 ttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacatt 3118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 253 - 409
Target Start/End: Original strand, 20900977 - 20901134
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||||||| ||||||||||||||||||| || | |||||||||||| |||||| ||||||||  ||||| ||||| ||||||||||||||||||||||||    
T  20900977 ttggttcccctgttttccctctattttccctgtatatttctctcaattctatcgacaacctattgatcccacttacgaaccgtgttacgttcctcgtgtt 20901076  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcg-atcatgactacattgt 409  Q
    ||| |||||||||||||||||||||| ||||||||| ||||  || ||||||||||||    
T  20901077 tacgttctttcaccggccgaccgatcctacgtaggaactcgtttcctgactacattgt 20901134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 1469108 - 1469203
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatt-tctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcct 346  Q
    |||||||||||| |||||||||||| || ||| | | || |||||||||||||| |||||||||||||||||||||| | |||||||| |||||||    
T  1469108 cttggttcctctcttttccctctatattttctgttttttctctctcaactctatgaacaacctaccgatcctacttacggaccgtgtttcgttcct 1469203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 408
Target Start/End: Original strand, 3277751 - 3277811
Alignment:
Q  348 gtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||||||| |||||||||||||||||||||| || |||||| |||| || |||||||||||    
T  3277751 gtgtttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacattg 3277811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 788
Target Start/End: Original strand, 968373 - 968408
Alignment:
Q  753 gttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||||||||    
T  968373 gttggcctggtggtattggcttgggacctgggagtg 968408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 2203499 - 2203538
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  2203499 ttgggttggcctagtggtattggcttgggacctgggagtg 2203538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 3624587 - 3624626
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3624587 ttgggttggcctagtggtattggcttgggacctgggagtg 3624626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 16852347 - 16852386
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  16852347 ttgggttggcctagtggtattggcttgggacctgggagtg 16852386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 18540305 - 18540344
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  18540305 ttgggttggcctagtggtattggcttgggacctgggagtg 18540344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Original strand, 3277701 - 3277746
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaa 298  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||    
T  3277701 ttggttcccctgttttccctctattttccctatatatttctctcaa 3277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 749 - 785
Target Start/End: Complemental strand, 23874451 - 23874415
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctggga 785  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23874451 ttgggttggcctagtggtattggcttgggacctggga 23874415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 6530814 - 6530853
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  6530814 ttgggttggcctggtggtgttggcttgggacctaggagtg 6530853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 8485006 - 8485045
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  8485006 ttgggttggcctggtggtatttgcttgggacctgtgagtg 8485045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 19703556 - 19703517
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  19703556 ttgggttggcctagtggtattggcttgggacctgagagtg 19703517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 20994527 - 20994488
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  20994527 ttgggttggcctagtggtattgacttgggacctgggagtg 20994488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 22269002 - 22268963
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  22269002 ttgggttggcctggtggtgttggcttgggaccttggagtg 22268963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 26688872 - 26688911
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  26688872 ttgggttggcctggtggtgttggcttgggaccttggagtg 26688911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 28783067 - 28783106
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| |||||||||||||||| ||||||||||||    
T  28783067 ttgggttggcttggtggtattggcttgagacctgggagtg 28783106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 29431018 - 29431057
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||| |||||||||||||||| ||||||||    
T  29431018 ttgggttggcctggcggtattggcttgggacttgggagtg 29431057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 29858118 - 29858079
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  29858118 ttggattggcctggtggtattggcttgggaccagggagtg 29858079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 787
Target Start/End: Original strand, 32157198 - 32157236
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  32157198 ttgggttggcctggtggtattgacttgggaccttggagt 32157236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 36881725 - 36881794
Alignment:
Q  270 cctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttac 340  Q
    ||||||||||||||  || ||| |||||| ||||||||||||| |||| ||||||||| ||| ||||||||    
T  36881725 cctctattttctctg-ctttttttctcaaatctatcaacaaccaaccggtcctacttacgaatcgtgttac 36881794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 53208585 - 53208429
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||| ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  53208585 cttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttatgaaccgtgttacgttcctcgtgt 53208486  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||||||||||||||||| ||||||||| |||| || |||||||||||    
T  53208485 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 53208429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 749 - 891
Target Start/End: Original strand, 9832504 - 9832647
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtgcggtttcatgttcgattccttctagtgccaatttgggtggggtaatttagcttcct-nnn 847  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  9832504 ttgggttggcccggtggtattggcttgggacctgggagtgcggtttcatgttcgattccttctagtgccaatttgggtggggtaatttagcttcctaaaa 9832603  T
Q  848 nnnnntatacttatgaaatgtccataagttgtttttagcttctt 891  Q
         |||||||||||||||||||||||||||||||||||||||    
T  9832604 aaaaatatacttatgaaatgtccataagttgtttttagcttctt 9832647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 9454826 - 9454982
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||     
T  9454826 cttggttcctctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgg 9454925  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| || ||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  9454926 ttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 9454982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 262 - 409
Target Start/End: Original strand, 7227292 - 7227439
Alignment:
Q  262 ctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctt 361  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||| |||||    
T  7227292 ctgtttttcctctattttctctatctatttctctcaactctatcaacaacctaccgatcctaattacgaaccgtggtacattcctcgtgtttacgttctt 7227391  T
Q  362 tcaccggccgaccgatcatacgtaggatctcgatcatgactacattgt 409  Q
    ||||||| |||| |||| ||| ||||||||||||| ||||||||||||    
T  7227392 tcaccggacgactgatcctacataggatctcgatcctgactacattgt 7227439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 252 - 406
Target Start/End: Original strand, 32130366 - 32130520
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||| |||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  32130366 cttggttcctttgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 32130465  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    |||| |||||||| ||||||||||||| ||||||||| |||| || |||||||||    
T  32130466 ttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacat 32130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 7323058 - 7323202
Alignment:
Q  264 gttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctttc 363  Q
    ||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  7323058 gttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttc 7323157  T
Q  364 accggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||||||||||||| ||||||||| || | || |||||||||||    
T  7323158 accggccgaccgatcctacgtaggaacttgttcctgactacattg 7323202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 50064074 - 50064230
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||| ||||||| |||||| | ||| ||||||||||||||||| ||||||||||||||||||| |||||| ||  |||||||||| |    
T  50064074 cttggttcctctgtttttcctctatattctctgtttatatctctcaactctatcaataacctaccgatcctacttacgaaccgcgtctcgttcctcgttt 50064173  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||||||| |||| |||||||| |||| ||||||||||||||||| |||||||||||    
T  50064174 ttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacattg 50064230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 842
Target Start/End: Complemental strand, 8075143 - 8075091
Alignment:
Q  790 ggtttcatgttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    ||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  8075143 ggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttc 8075091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 2667869 - 2667908
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2667869 ttgggttggcctggtggtattggcttgggatctgggagtg 2667908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 16991549 - 16991588
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  16991549 ttgggttggcctggtggtattggcttgggatctgggagtg 16991588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 783
Target Start/End: Original strand, 8051221 - 8051255
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgg 783  Q
    |||||||||||||||||||||||||||||||||||    
T  8051221 ttgggttggcctggtggtattggcttgggacctgg 8051255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 787
Target Start/End: Complemental strand, 10499178 - 10499140
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10499178 ttgggttggcctggtggtattggcttgggatctgggagt 10499140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 17554778 - 17554817
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  17554778 ttgggttggtttggtggtattggcttgggacctgggagtg 17554817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 788
Target Start/End: Original strand, 21960554 - 21960597
Alignment:
Q  745 ccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||  |||||||||||||||||||||||| |||||    
T  21960554 ccaattgggttgcgctggtggtattggcttgggacctgagagtg 21960597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 31520674 - 31520635
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  31520674 ttgggttggcctggtggcattggcttgggatctgggagtg 31520635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 32651503 - 32651468
Alignment:
Q  753 gttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||| |||||||||||||||||||||||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtg 32651468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 42799816 - 42799777
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  42799816 ttgggttggcctggtggtgttggcttgggaccttggagtg 42799777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 750 - 788
Target Start/End: Original strand, 12761520 - 12761558
Alignment:
Q  750 tgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  12761520 tgggttggtctggtggtattgacttgggacctgggagtg 12761558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 787
Target Start/End: Complemental strand, 26871573 - 26871535
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  26871573 ttgggttggcctggtggtgttggcttgggaccttggagt 26871535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 3055001 - 3055038
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggag 786  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  3055001 ttgggttggcctggtggtgttggcttgggaccttggag 3055038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 36536281 - 36536125
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| ||||    
T  36536281 cttggttcctctgtttttcctctattttctctatctattcctctcaactctatcaacaacctaccgatcctacttacaaaccgtgttacgtgccttgtgt 36536182  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| ||||||||| |||||||| ||| ||||||||||||||||  |||||||||||    
T  36536181 ttactttctttcactggccgaccaatcctacgtaggatctcgattctgactacattg 36536125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 44673371 - 44673526
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||||||||  |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  44673371 cttggttcccttgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgt 44673470  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacatt 407  Q
    |||| |||||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  44673471 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 44673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 25438500 - 25438655
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||| ||| ||||||||||||||||||| |||| |||||||||||  | |||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  25438500 ttggctcccctgttttccctctattttccctatatatttctctcacttatatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 25438599  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||| |||||||||||||||||||||| ||||||||| |||| || |||||||||||    
T  25438600 tacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 25438655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 254 - 408
Target Start/End: Complemental strand, 37154736 - 37154589
Alignment:
Q  254 tggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgttt 353  Q
    |||||||| ||||| |||||||||||||||||  ||||||||||| ||||||       ||| ||||||||||| |||||||||||||||||||||||||    
T  37154736 tggttcctttgtttaccctctattttctctatacatttctctcaattctatc-------tactgatcctacttacgaaccgtgttacgttcctcgtgttt 37154644  T
Q  354 acattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    || ||||||||||  || ||||||  ||||||||||||||||| |||||||||||    
T  37154643 acgttctttcaccaaccaaccgattctacgtaggatctcgatcttgactacattg 37154589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 42975756 - 42975646
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||||| ||||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| || |||||||||  ||||||||    
T  42975756 cttggttcctccgtttttcctctattttctctgtttttttctctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgaccctcgtgt 42975657  T
Q  352 ttacattcttt 362  Q
    ||||| |||||    
T  42975656 ttacaatcttt 42975646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 41715031 - 41714898
Alignment:
Q  263 tgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattcttt 362  Q
    ||||||||| |||||||||||||||||| || ||||| |||| ||||||||||| ||||||||||  || ||||||| |||||| |||||||| ||||||    
T  41715031 tgttttcccactattttctctatctattactttcaacactattaacaacctaccaatcctacttacaaatcgtgttatgttccttgtgtttacgttcttt 41714932  T
Q  363 caccggccgaccgatcatacgtaggatctcgatc 396  Q
    | |||  | ||| |||||||||||||||||||||    
T  41714931 cgccgaacaaccaatcatacgtaggatctcgatc 41714898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 33391836 - 33391758
Alignment:
Q  330 aaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| ||| || ||||||||| |||| |||||||||||    
T  33391836 aaccgtgttacgttcctcgtgtttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacattg 33391758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 40712679 - 40712579
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||| |||||||||||| |||||||||||  | |   ||||||||||||||||||| |||||||| |||||||||| | |||||| || |  ||||||||    
T  40712679 cttgtttcctctgtttttcctctattttccgttt---tttctctcaactctatcaaaaacctaccaatcctacttacggaccgtgctatgaccctcgtgt 40712583  T
Q  352 ttac 355  Q
    ||||    
T  40712582 ttac 40712579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 37480082 - 37480121
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37480082 ttgggttggcctggtggtattggcttgggacctgagagtg 37480121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 42327464 - 42327425
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  42327464 ttgggttggcctagtggtattggcttgggacctgggagtg 42327425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 42602561 - 42602600
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  42602561 ttgggttggcctagtggtattggcttgggacctgggagtg 42602600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 750 - 788
Target Start/End: Original strand, 21213777 - 21213815
Alignment:
Q  750 tgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtg 21213815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 788
Target Start/End: Complemental strand, 23052589 - 23052553
Alignment:
Q  752 ggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23052589 ggttggcctggtggtattggcttgggacttgggagtg 23052553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 749 - 785
Target Start/End: Complemental strand, 37756040 - 37756004
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctggga 785  Q
    |||||||||| ||||||||||||||||||||||||||    
T  37756040 ttgggttggcttggtggtattggcttgggacctggga 37756004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 7799104 - 7799065
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  7799104 ttgggttgtcctggtggtattggcttgggacttgggagtg 7799065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 788
Target Start/End: Complemental strand, 12086194 - 12086159
Alignment:
Q  753 gttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12086194 gttggcctggtggtattggcttgggacctggaagtg 12086159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 25931013 - 25931052
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  25931013 ttgggttggcctggtggtattggtttgggacctgagagtg 25931052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 26377567 - 26377624
Alignment:
Q  292 ctctcaactctatcaacaa---cctaccgatcctacttatgaaccgtgttacgttcct 346  Q
    |||||||||||||||| ||   |||||| |||||||||| ||||||||||||||||||    
T  26377567 ctctcaactctatcaataataacctacctatcctacttacgaaccgtgttacgttcct 26377624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 29503278 - 29503317
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  29503278 ttgggttggcctagtggtattggtttgggacctgggagtg 29503317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 39714999 - 39715038
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  39714999 ttgggttggcatggtggtattgacttgggacctgggagtg 39715038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 42922421 - 42922460
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  42922421 ttgggttggcctagtggtattggcttggaacctgggagtg 42922460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 26377615 - 26377669
Alignment:
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    |||| ||| |||||||||||||||||| || ||| |||||||||| |||||||||    
T  26377615 ttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacat 26377669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Complemental strand, 950597 - 950544
Alignment:
Q  300 tctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgttt 353  Q
    ||||||||||||||||| |||||||||| |||  ||||||||  ||||||||||    
T  950597 tctatcaacaacctaccaatcctacttacgaattgtgttacgaccctcgtgttt 950544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 4e-53; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 262 - 408
Target Start/End: Complemental strand, 13425588 - 13425442
Alignment:
Q  262 ctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctt 361  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||    
T  13425588 ctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 13425489  T
Q  362 tcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||||    
T  13425488 tcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 13425442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 253 - 396
Target Start/End: Complemental strand, 18133801 - 18133658
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18133801 ttggttcctctgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 18133702  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatc 396  Q
    | | ||| ||||||||||||||| || | ||||||| |||||||    
T  18133701 ttcgttcattcaccggccgaccggtcctccgtaggacctcgatc 18133658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 263 - 396
Target Start/End: Complemental strand, 23889931 - 23889798
Alignment:
Q  263 tgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattcttt 362  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| | ||||||    
T  23889931 tgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctactaacgaaccgtgttacgttcctcgtgttttcgttcttt 23889832  T
Q  363 caccggccgaccgatcatacgtaggatctcgatc 396  Q
    ||||||||||||| || | ||||||| |||||||    
T  23889831 caccggccgaccggtcctccgtaggacctcgatc 23889798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 25100936 - 25100779
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgtt-acgttcctcgtg 350  Q
    |||||||||||| |||| ||||||| |||||| | ||| | ||||||  ||||||||||||||||||||||||||| |||| ||||| |||||||||||     
T  25100936 cttggttcctctatttttcctctatattctctgtttatatttctcaatactatcaacaacctaccgatcctacttacgaactgtgttaacgttcctcgtt 25100837  T
Q  351 tttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||  ||| |||||||||||||| ||| || ||||||||| |||| | |||||||||    
T  25100836 tttatgttccttcaccggccgaccaatcctatgtaggatcttgatcctaactacattg 25100779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 6539407 - 6539318
Alignment:
Q  289 tttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatc 378  Q
    |||||||| || ||||||||||| ||||||||||||||| ||||| ||| | ||||||  ||||||| ||| |||||| ||| |||||||    
T  6539407 tttctctcgaccctatcaacaacttaccgatcctacttacgaaccatgtaatgttcctaatgtttacgttccttcaccagcctaccgatc 6539318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 10875612 - 10875684
Alignment:
Q  324 cttatgaaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatc 396  Q
    |||| ||||||||||| || |||||||||||| ||| | || ||||||||||| | |||||||||||||||||    
T  10875612 cttacgaaccgtgttatgtccctcgtgtttacgttcctacatcggccgaccgaacctacgtaggatctcgatc 10875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 12188372 - 12188333
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  12188372 ttgggttggcctagtggtattggcttgggacctgggagtg 12188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 21418477 - 21418516
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  21418477 ttgggttggcctggtggtattggcttgggacttgggagtg 21418516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 33549111 - 33549150
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  33549111 ttgggttggtctggtggtattggcttgggacctgggagtg 33549150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 752 - 788
Target Start/End: Complemental strand, 12234573 - 12234537
Alignment:
Q  752 ggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12234573 ggttggcctggtggtattgacttgggacctgggagtg 12234537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 788
Target Start/End: Original strand, 13441052 - 13441096
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||    
T  13441052 tccacttgggttggtcgggtggtattggcttgggacctgggagtg 13441096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Original strand, 20213109 - 20213153
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  20213109 gttcgattccctctagtgtcaatttgggtgggctaatttagcttc 20213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Original strand, 22107132 - 22107176
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  22107132 gttcgattccctctagtgtcaatttgggtgggctaatttagcttc 22107176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 784
Target Start/End: Complemental strand, 6776676 - 6776641
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctggg 784  Q
    |||||||||||||||||||||||||||||| |||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctggg 6776641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 10338243 - 10338204
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  10338243 ttgggttggcatggtggtattggcttgggacctaggagtg 10338204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 799 - 842
Target Start/End: Complemental strand, 14199954 - 14199911
Alignment:
Q  799 ttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||    
T  14199954 ttcgattccttctagtgtcaatttgggtggactaatttagcttc 14199911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 31623060 - 31623021
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  31623060 ttgggttggtccggtggtattggcttgggacctgggagtg 31623021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 6e-52; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 12859125 - 12858969
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |||    
T  12859125 cttggttcccctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcatgt 12859026  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||| |||||||||||||||||||||  ||||||||| |||| || |||||||||||    
T  12859025 ttacgttctttcaccggccgaccgatgctacgtaggaactcgttcctgactacattg 12858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 32775375 - 32775530
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||| ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  32775375 ttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 32775474  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||| |||||||||||||||||||||| |||| |||| |||| || |||||||||||    
T  32775475 tacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacattg 32775530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 36167628 - 36167472
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    ||||| ||| ||||||| ||||||||||| |||| |||||||||||| |||||| |||||||| | |||||||||| |||||||||||||||||||||||    
T  36167628 cttggctcccctgtttttcctctattttccctatatatttctctcaattctatcgacaacctatcaatcctacttacgaaccgtgttacgttcctcgtgt 36167529  T
Q  352 ttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||||||||||||||||| ||||||| ||||||||| |||| || |||||||||||    
T  36167528 ttacattctttcaccggccaaccgatcctacgtaggaactcgttcctgactacattg 36167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 19886776 - 19886931
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    |||| ||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  19886776 ttggctcccctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtt 19886875  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||| |||||||||||||||||||||| ||||  ||| |||| || |||||||||||    
T  19886876 tacgttctttcaccggccgaccgatcctacgctggaactcgttcctgactacattg 19886931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 46082329 - 46082238
Alignment:
Q  287 tatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctttcaccggccgaccgatc 378  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  46082329 tatttctctcaactctatcaacaacctagcaatcctacatatgaaccgtgttacgttccttgtgtttacgttccttcaccggctgaccgatc 46082238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 266 - 406
Target Start/End: Complemental strand, 5465574 - 5465442
Alignment:
Q  266 tttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtttacattctttcac 365  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||      || ||||| |||||||||||| |||||||| |||||||||    
T  5465574 tttccctctattttcactatctatttctctcaactctatcaacaacctaccgat-----atacgaaccatgttacgttccttgtgtttacgttctttcac 5465480  T
Q  366 cggccgaccgatcatacgtaggatctcgatcatgactacat 406  Q
    | | ||| |||||   | ||||||||||||| | |||||||    
T  5465479 cagtcgaacgatc---cttaggatctcgatcctaactacat 5465442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 252 - 408
Target Start/End: Complemental strand, 19780991 - 19780831
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttc----tctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctc 347  Q
    |||||||||||||||||||||||||||||||  | | ||||    |||||||||||||||||| ||||| |||||||||| ||| ||||||| |  ||||    
T  19780991 cttggttcctctgttttccctctattttctccttttttttccttctctcaactctatcaacaagctacctatcctacttacgaatcgtgttaagaccctc 19780892  T
Q  348 gtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||||||  ||||||||| ||| || |||||||| ||  | ||||| | |||||||||||    
T  19780891 gtgtttacgatctttcaccagcctactgatcatacttaaaaactcgaacctgactacattg 19780831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 11599518 - 11599454
Alignment:
Q  344 cctcgtgtttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    |||||||||||| ||| |||| ||||||||||| | ||||||||||||||||| |||||||||||    
T  11599518 cctcgtgtttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacattg 11599454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 46082410 - 46082338
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctac 324  Q
    |||| |||||||||||| |||||||||||||| | ||||| |||||||||||||||||| ||| | |||||||    
T  46082410 cttgtttcctctgtttttcctctattttctctgtttatttatctcaactctatcaacaaactagcaatcctac 46082338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 744 - 788
Target Start/End: Complemental strand, 15905747 - 15905703
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||| |||||||||||||| |||||||||||||||||||||||||    
T  15905747 tccacttgggttggcctggcggtattggcttgggacctgggagtg 15905703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 25021404 - 25021365
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25021404 ttgggttggcctagtggtattggcttgggacctgggagtg 25021365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 26459479 - 26459440
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  26459479 ttgggttggcctagtggtattggcttgggacctgggagtg 26459440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 30579342 - 30579381
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30579342 ttgggttggcctggtggtattggcttgagacctgggagtg 30579381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 41487369 - 41487408
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  41487369 ttgggttggcctggtggtattggcttgggacttgggagtg 41487408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 42836070 - 42836031
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  42836070 ttgggttggcctagtggtattggcttgggacctgggagtg 42836031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 43590914 - 43590953
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtg 43590953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 787
Target Start/End: Original strand, 39631851 - 39631889
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  39631851 ttgggttggcctagtggtattggcttgggacctgggagt 39631889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 752 - 785
Target Start/End: Complemental strand, 11721026 - 11720993
Alignment:
Q  752 ggttggcctggtggtattggcttgggacctggga 785  Q
    ||||||||||||||||||||||||||||||||||    
T  11721026 ggttggcctggtggtattggcttgggacctggga 11720993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 749 - 790
Target Start/End: Complemental strand, 22932780 - 22932739
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtgcg 790  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  22932780 ttgggttggtatggtggtattggcttgggacctgggagtgcg 22932739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 842
Target Start/End: Complemental strand, 33181218 - 33181174
Alignment:
Q  798 gttcgattccttctagtgccaatttgggtggggtaatttagcttc 842  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||    
T  33181218 gttcgattccctctagtgtcaatttgggtgggctaatttagcttc 33181174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 788
Target Start/End: Complemental strand, 45976997 - 45976953
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||    
T  45976997 tccacttgggttggcctagtggtattggcttgtgacctgggagtg 45976953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 7801187 - 7801226
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  7801187 ttggtttggcctggtggtattgacttgggacctgggagtg 7801226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 19553461 - 19553499
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  19553461 ttgggttggcctggtggtattggctt-ggacctgggagtg 19553499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 22760870 - 22760909
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  22760870 ttgggttggtctggtggtattgacttgggacctgggagtg 22760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 23301671 - 23301632
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  23301671 ttgggttggcctggtggtattgacttgggacttgggagtg 23301632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 25956361 - 25956322
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  25956361 ttgggttggcctagtggtattggcttgggaccttggagtg 25956322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 32368238 - 32368277
Alignment:
Q  299 ctctatcaacaacctaccgatcctacttatgaaccgtgtt 338  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  32368238 ctctatcaacaacctactgatcctacttatgaatcgtgtt 32368277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 39499788 - 39499749
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  39499788 ttgggttggcctagtggtattggcttgggacctgtgagtg 39499749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 48771945 - 48771984
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  48771945 ttgggttggcttggtggtattggcttgggatctgggagtg 48771984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 749 - 787
Target Start/End: Original strand, 30442495 - 30442533
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  30442495 ttgggttggcccagtggtattggcttgggacctgggagt 30442533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 252 - 408
Target Start/End: Original strand, 8549 - 8706
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtg- 350  Q
    ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||| |||||| |||||||| |||  |||||||| ||||||||||||     
T  8549 cttggttcctctgtttttcctctattttctctatttatttcactcaactctatcaaaaacctaacgatcctatttacaaaccgtgtcacgttcctcgtgt 8648  T
Q  351 tttacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||||| ||| |||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  8649 tttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacattg 8706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 88; Significance: 8e-42; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 253 - 408
Target Start/End: Original strand, 17295 - 17450
Alignment:
Q  253 ttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgtt 352  Q
    ||||||||| ||| |||  |||||||||||| ||||||||||||||||||||||||||  || || ||||||||| ||||||||||||||||||||||||    
T  17295 ttggttcctatgtattctttctattttctctgtctatttctctcaactctatcaacaaagtatcgctcctacttacgaaccgtgttacgttcctcgtgtt 17394  T
Q  353 tacattctttcaccggccgaccgatcatacgtaggatctcgatcatgactacattg 408  Q
    ||| |||||||||| |||| | |||| ||||||||||||||||| ||| |||||||    
T  17395 tacgttctttcacctgccggcagatcctacgtaggatctcgatcctgattacattg 17450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 4394 - 4501
Alignment:
Q  252 cttggttcctctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaaccgtgttacgttcctcgtgt 351  Q
    |||| |||||||||||| |||||||||||||| | | ||||||||||||||||||||| |||| |||||||||||| |||| ||||||||  ||||||||    
T  4394 cttgtttcctctgtttttcctctattttctctgttt-tttctctcaactctatcaaca-cctatcgatcctacttacgaactgtgttacgaccctcgtgt 4491  T
Q  352 ttacattctt 361  Q
    ||||| ||||    
T  4492 ttacaatctt 4501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 15392 - 15353
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  15392 ttgggttggtctggtggtattggcttgggacctgggagtg 15353  T

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Target: scaffold0299 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Original strand, 11535 - 11574
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  11535 ttgggatggcctggtggtattggcttgggatctgggagtg 11574  T

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Target: scaffold0101 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 43401 - 43362
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  43401 ttgggttggcatggtggtattggcttgggacttgggagtg 43362  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 744 - 787
Target Start/End: Complemental strand, 38976 - 38933
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacctgggagt 787  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||    
T  38976 tccacttgggttggtctggtggtattggcttgggacctaggagt 38933  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 788
Target Start/End: Complemental strand, 95040 - 95001
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtg 788  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  95040 ttgggttggcctagtggtattggcttggaacctgggagtg 95001  T

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Target: scaffold0955 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 781
Target Start/End: Original strand, 3465 - 3502
Alignment:
Q  744 tccaattgggttggcctggtggtattggcttgggacct 781  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3465 tccacttgggttggccgggtggtattggcttgggacct 3502  T

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Target: scaffold0417 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 790
Target Start/End: Original strand, 10226 - 10267
Alignment:
Q  749 ttgggttggcctggtggtattggcttgggacctgggagtgcg 790  Q
    ||||||||||||| || ||||||||||||| |||||||||||    
T  10226 ttgggttggcctgatgatattggcttgggatctgggagtgcg 10267  T

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