View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_10 (Length: 409)
Name: NF7240_low_10
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 64 - 294
Target Start/End: Complemental strand, 12381931 - 12381702
Alignment:
| Q |
64 |
tgggtttcaaaaagcaattacaccatataaaagttcacatcgtaacttttttaatagagaaaaaatttattaaaatgacaccaacgactattttacaatg |
163 |
Q |
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| T |
12381931 |
tgggcttcaaaaagcaat-acaccatataaaagttcacatcgtaacttttttaatagagaaaaaatttattaaaatgacaccaacgactattttacaatg |
12381833 |
T |
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| Q |
164 |
tcttcaacaaaatttggactcaataattaacttgaga-tacactgccaagttcttatcaataagacaagcttctcaagtttaagtacttattctatttag |
262 |
Q |
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| T |
12381832 |
tcttcaacaaaatttggacttaataattaacttgagattacactgctaagttcttatcaat-agacaagcttctcaagtttaagtacttattctatttac |
12381734 |
T |
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| Q |
263 |
ataacacactacaactattcataactcaattc |
294 |
Q |
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| T |
12381733 |
ataacacactacaactattcataactcaattc |
12381702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 12381705 - 12381668
Alignment:
| Q |
361 |
attcattaatcatgtagattaagattttggttgatgtc |
398 |
Q |
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| T |
12381705 |
attcattaatcatgtagattaagattttggttgatgtc |
12381668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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