View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_11 (Length: 386)
Name: NF7240_low_11
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 42640089 - 42639715
Alignment:
| Q |
1 |
ggtccttgttatgcaggccaaacaccaccaagtttgcctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatc |
100 |
Q |
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| T |
42640089 |
ggtccttgttatgcaggccaaacaccaccaagtttgcctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatc |
42639990 |
T |
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| Q |
101 |
aagctgattctagttgtgcaggaaagaacttctacacaagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatccttgga |
200 |
Q |
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| T |
42639989 |
aagctgattctagttgtgcaggaaagaacttctacacaagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatctttgga |
42639890 |
T |
|
| Q |
201 |
tgactccaaacgtgaggttgctgctgcttttgctcatttcacacatgaaactggacgtaagtattcatttaccatcaactaaacaaaactaacgatatat |
300 |
Q |
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| T |
42639889 |
tgactccaaacgtgaggttgctgctgcttttgctcatttcacacatgaaactggacgtaagtattcatttaccatcaaccaaacaaaactaacgatatat |
42639790 |
T |
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| Q |
301 |
ttaaactgtgttaactaataatttgttgtcaaatttggtaacacaactattgggtaaatgttaagagtcccacat |
375 |
Q |
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| T |
42639789 |
ttaaactgtgttaactaataatttgttgtcaaatttggtaacacaactattggataaatgttaagagtcccacat |
42639715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 42635029 - 42634801
Alignment:
| Q |
37 |
cctaacaatgatgctaatgtggctgacatccttacacaagatttcttcaatcgtataattgatcaagctgattctagttgtgcaggaaagaacttctaca |
136 |
Q |
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| T |
42635029 |
cctagcaatgatgtcaacgtggctgacattgttacacaagaattcttcaatagtataattgatcaagctgattctagttgtgcaggaaagaacttctatt |
42634930 |
T |
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| Q |
137 |
caagagctgcttttctcgatgccctcaattcttataatcagtttggtaggtctggatccttggatgactccaaacgtgaggttgctgctgcttttgctca |
236 |
Q |
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| T |
42634929 |
caagagctgtttttcttgatgccctcggttcttataatcagtttggtagggttggttctgtagatgactccaaacgcgaaatcgcagctgcttttgcaca |
42634830 |
T |
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| Q |
237 |
tttcacacatgaaactggacgtaagtatt |
265 |
Q |
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| T |
42634829 |
tttcactcatgaaactggacgtaagtatt |
42634801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42628935 - 42628887
Alignment:
| Q |
1 |
ggtccttgttatgcaggccaaacaccaccaagtttgcctaacaatgatg |
49 |
Q |
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| T |
42628935 |
ggtccttgttatgcaggccgaacaccaccaagtttgcctagcaatgatg |
42628887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 282325 - 282369
Alignment:
| Q |
271 |
accatcaactaaacaaaactaacgatatatttaaactgtgttaac |
315 |
Q |
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|||||| |||||||| ||||||| ||||||||||| ||||||||| |
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| T |
282325 |
accatccactaaacataactaaccatatatttaaattgtgttaac |
282369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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