View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_16 (Length: 348)
Name: NF7240_low_16
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 39609864 - 39610199
Alignment:
| Q |
1 |
tcaatttttgtacaattttcctcacatgttggaacaaaatcttctttttgtcgtattctatttaaaaaagggttttcttgtactaactgtgtgagaccat |
100 |
Q |
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| T |
39609864 |
tcaatttttgtacaattttcctctcatgttggaacaaaatcttctttttgtcgtattctatttaaaaaagggttttcttgtactaactgtgtgagaccat |
39609963 |
T |
|
| Q |
101 |
ggtttgatgcagcaagaggttgaactaagcagacagcgccatgctgcagatctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagta |
200 |
Q |
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| T |
39609964 |
ggtttgatgcagcaagaggttgaactaagcagacagcgccatgctgcagatctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagta |
39610063 |
T |
|
| Q |
201 |
tcataaactcttaagctgctcttctatatcttgaccaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaa |
300 |
Q |
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| T |
39610064 |
tcataaactcttaagctgctcttctatatcttgaccaattcgataaatgacaaccttttaacaattgatgtaaattgtcatcctataagacaaatacaaa |
39610163 |
T |
|
| Q |
301 |
ataccatttattaaatttacctagtatgtctgatgt |
336 |
Q |
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| T |
39610164 |
ataccatttattaaatttacctagtatgtctgatgt |
39610199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 40159770 - 40159563
Alignment:
| Q |
28 |
gttggaacaaaatcttcttttt-gtcgtattctatttaaaaaagggttt-tcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaac |
125 |
Q |
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| T |
40159770 |
gttggaacaaaattttcttttttgccgcattctatttaaacaagcttttgtcttgtactaactgtatgagaccattgttttatgcagctagaagttgaac |
40159671 |
T |
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| Q |
126 |
taagcagacagcgccatgctgcagatctcattgagaaggagaggcttagtcgaatgatgggctgtaaagttagtatcataaactcttaagctgctcttct |
225 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |
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| T |
40159670 |
taagcagacagcgccatgctggagatctcaatgagaaggagaggcttagtcgaatgatgggcaataaagttagtatcataaactcttaggctactcttct |
40159571 |
T |
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| Q |
226 |
atatcttg |
233 |
Q |
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|||||||| |
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| T |
40159570 |
atatcttg |
40159563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 33945883 - 33945833
Alignment:
| Q |
76 |
tcttgtactaactgtgtgagaccatggtttgatgcagcaagaggttgaact |
126 |
Q |
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| T |
33945883 |
tcttgtactaactgtgttagaccatggtttgatgcagcaagaggctgaact |
33945833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 31742245 - 31742208
Alignment:
| Q |
99 |
atggtttgatgcagcaagaggttgaactaagcagacag |
136 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
31742245 |
atggtttgatgcagcaagaggttgaactgagcaaacag |
31742208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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