View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_19 (Length: 331)
Name: NF7240_low_19
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 106 - 316
Target Start/End: Original strand, 37912402 - 37912612
Alignment:
| Q |
106 |
gtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaatac |
205 |
Q |
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| T |
37912402 |
gtaccgtctttggcgaattcggaaaggacaaagagagcacaattagcagaagaacgatctgaacaagaagatgaaaaagaggatttgagaagatgaatac |
37912501 |
T |
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| Q |
206 |
gattggaaatatcagtaggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttg |
305 |
Q |
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| T |
37912502 |
gattggaaatatcagtgggaagatctaaacgacgaggtttggttgttacttcttctacttcatcttcttcagtccaatcgagttttctcttcaaactttg |
37912601 |
T |
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| Q |
306 |
ggtgttgttac |
316 |
Q |
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||||||||||| |
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| T |
37912602 |
ggtgttgttac |
37912612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 37905891 - 37905922
Alignment:
| Q |
106 |
gtaccgtctttggcgaattcggaaaggacaaa |
137 |
Q |
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| T |
37905891 |
gtaccgtctttggcgaattcggaaaggacaaa |
37905922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 26464122 - 26464210
Alignment:
| Q |
115 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
203 |
Q |
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| T |
26464122 |
ttggcgaattcggagaggacgaagagagcacaattagcggaagaacaatttgaaggagaagacgaaaaagtggatttgagaaaatgaat |
26464210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 31197858 - 31197946
Alignment:
| Q |
115 |
ttggcgaattcggaaaggacaaagagagcacaattagcggaagaacgatctgaacgagaagatgaaaaagaggatttgagaagatgaat |
203 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||| | |||| ||||||| |||||| |||||||||||||||||| |
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| T |
31197858 |
ttggcgaattcggagaggacggagagagcacaattagcggaagaacggtttgaaggagaagacaaaaaagcggatttgagaagatgaat |
31197946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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