View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_2 (Length: 717)
Name: NF7240_low_2
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 96 - 351
Target Start/End: Complemental strand, 14354867 - 14354618
Alignment:
| Q |
96 |
tacatgtgattggctatttatcatcattagtggggtgatatgagacttagttacaaaacctgatctgcaatttgctttttaactcacaaaacaacactca |
195 |
Q |
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| T |
14354867 |
tacatgtgattggctatttatcatcattagtggggtgatatga--cttagttacaaaacctaatctgcaatttgctttttaactcacaaaacaacactca |
14354770 |
T |
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| Q |
196 |
taaaatttcccgaacaatatttcgctacatatagcattgttgatacatacattatttagtagttatggaatgttttgattaatgcataaccgcaacctat |
295 |
Q |
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| T |
14354769 |
tgaaatttccagaacaatattttgctacatatagcattgttgatacat----tatttagtagttatggaatgttttgattaatgcataaccgtaatctat |
14354674 |
T |
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| Q |
296 |
aacacgacattcgtaacagtcaaaatcgtaaaatcatacatatatgtgacaacgat |
351 |
Q |
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| T |
14354673 |
aacacgacattcgtaacagtcaaaatcgtgaaatcctacatatatgcgacaacgat |
14354618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 483 - 706
Target Start/End: Complemental strand, 14354619 - 14354410
Alignment:
| Q |
483 |
attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaannnnnnnngttgacaatcttctgaagagaattat |
582 |
Q |
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| T |
14354619 |
attattatatataacaaatacatataacaaatggccaacacaacacaatgtctttattgatcagaattttttttgttgacaatcttctgaagagaattat |
14354520 |
T |
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| Q |
583 |
tgcatatatatagatatgcatagaaacatataagtcattacttattatt-actagttaaagggaaaaggcttcttcaatagataatattgattaattatg |
681 |
Q |
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| T |
14354519 |
---------------atgcatagaaacatataagtcattacttattatttactagttaaagggaaaaggcttcttcaatagataatattaattaattatg |
14354435 |
T |
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| Q |
682 |
aaaattaaaaatttggttgatgtcc |
706 |
Q |
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| T |
14354434 |
aaaattaaaagtttggttgatgtcc |
14354410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 18916039 - 18916001
Alignment:
| Q |
16 |
atcattctgtagccatgtattcccggaaatgtcattctt |
54 |
Q |
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| T |
18916039 |
atcattccctagccatgtattcccggaaatgtcattctt |
18916001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 15805650 - 15805612
Alignment:
| Q |
16 |
atcattctgtagccatgtattcccggaaatgtcattctt |
54 |
Q |
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| T |
15805650 |
atcattccctagccatgtattcccggaaatgtcattctt |
15805612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 32597667 - 32597705
Alignment:
| Q |
16 |
atcattctgtagccatgtattcccggaaatgtcattctt |
54 |
Q |
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| T |
32597667 |
atcattccctagccatgtattcccggaaatgtcattctt |
32597705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 4643883 - 4643921
Alignment:
| Q |
16 |
atcattctgtagccatgtattcccggaaatgtcattctt |
54 |
Q |
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| T |
4643883 |
atcattctttagccatgtattcccgaaaatgtcattctt |
4643921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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