View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_20 (Length: 325)
Name: NF7240_low_20
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_20 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 39609598 - 39609908
Alignment:
| Q |
15 |
aattttgacaataaactcttatctgtagggccaaatttctagggaatccttaatgcagttaacgttggtcgaacaactccgggagagacaggaaatggag |
114 |
Q |
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| T |
39609598 |
aattttgacaataaactcttatctgtagggccaaatttctagggaatccttgatgcagttaacgttggtcgaacaactccgggagagacaggaaatggag |
39609697 |
T |
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| Q |
115 |
aagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattag |
214 |
Q |
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| T |
39609698 |
aagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattag |
39609797 |
T |
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| Q |
215 |
tggaagagaggattctttatgagcgtgagcaacaagtatgtctacttgggttccctcggaaacaattcactttttgtacaattttcatctcatgttggaa |
314 |
Q |
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| T |
39609798 |
tggaagagaggattctttatgagcgtgagcaacaagtatgtctacttgtgttccctcggaaacaattcaatttttgtacaattttcctctcatgttggaa |
39609897 |
T |
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| Q |
315 |
caaaatcttct |
325 |
Q |
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||||||||||| |
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| T |
39609898 |
caaaatcttct |
39609908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 34 - 325
Target Start/End: Complemental strand, 40160042 - 40159753
Alignment:
| Q |
34 |
tatctgtagggccaaatttctagggaatccttaatgcagttaacgttggtcgaacaactccgggagagacaggaaatggagaagaagcttcagaaattgg |
133 |
Q |
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| T |
40160042 |
tatctgtagggccaaatttctagggaatccttgatgcagttgacgttggtcgaacaagtccgggagagacaggaaatggagaagaagcttcagaaattgg |
40159943 |
T |
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| Q |
134 |
ccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattagtggaagagaggattcttta |
233 |
Q |
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| T |
40159942 |
ccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgatgctgcatatcaacagcgattagtggaagagagggttcttca |
40159843 |
T |
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| Q |
234 |
tgagcgtgagcaacaagtatgtctacttgggttccctcggaaacaattcactttttgtacaattttcatctcatgttggaacaaaatcttct |
325 |
Q |
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| T |
40159842 |
tgagcgtgagcaacaagtatgtctacttgtgttccattggaaacaattaaatttttacacatttttc--ctcaagttggaacaaaattttct |
40159753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 99 - 262
Target Start/End: Complemental strand, 33946169 - 33946006
Alignment:
| Q |
99 |
gagacaggaaatggagaagaagcttcagaaattggccaaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgca |
198 |
Q |
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|||||| |||||||||||||| || | ||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||| ||| |
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| T |
33946169 |
gagacaagaaatggagaagaaactgaaaaaattaagtaaaaccatggattttttggaaagagctaagagagaagagtctgctccgctaatcgaagcggca |
33946070 |
T |
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| Q |
199 |
tatcaacatggattagtggaagagaggattctttatgagcgtgagcaacaagtatgtctacttg |
262 |
Q |
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| T |
33946069 |
tatcaacaacgcctagtggaagagaggattcttcatgagcgtgagcaacaagtatgtctacttg |
33946006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 249
Target Start/End: Complemental strand, 18697557 - 18697444
Alignment:
| Q |
136 |
aaaaccatggatcatttggaaagagcaaagagagaagaggctgctccgctaattgaagctgcatatcaacatggattagtggaagagaggattctttatg |
235 |
Q |
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| T |
18697557 |
aaaaccattgattttttggaaagagcaaagagaggaaagtctgctccgcttatcgaagcagcatatcaacaatgcctaatggaagagaggattcttcacg |
18697458 |
T |
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| Q |
236 |
agcgtgagcaacaa |
249 |
Q |
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| T |
18697457 |
accgtgagcaacaa |
18697444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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