View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_22 (Length: 320)
Name: NF7240_low_22
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 22055903 - 22055599
Alignment:
| Q |
1 |
aaagtgacttgtttcatcttcaagttctttgttttaagccttctttgtagatataatttgtttagggttttgatggctatgaaagagtgtgaatgatgaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22055903 |
aaagtgacttgtttcatcttcaagttctttgttttaagccttctttgtagatataattt-tttagggttttgatggctatgaaagagtgtgaatgatgaa |
22055805 |
T |
|
| Q |
101 |
atgtgtgtttgatgattggggagtgtggaagagaggggttataaagaggttgattaatgaaatgataggttggtgaaatatattatggttgtgagattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22055804 |
atgtgtgtttgatgattggggagtgtggaagagaggggttataaagaggttgattaatgaaatgataggttggtgaaatatattatggttgtgagattaa |
22055705 |
T |
|
| Q |
201 |
tttgtagctgtgttatgtgaaggtggtatatcccatctatcatggagaataaagatcttttatctaattatttttaatatcgttggacaaaggagaatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22055704 |
tttgtagctgtgttatgtgaaggtggtatatcccatctatcatggagaataaagatcttttatctaattatttttaatatcgttggacaaaggagaatga |
22055605 |
T |
|
| Q |
301 |
cattac |
306 |
Q |
| |
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|||||| |
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| T |
22055604 |
cattac |
22055599 |
T |
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