View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_23 (Length: 317)

Name: NF7240_low_23
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_23
NF7240_low_23
[»] chr7 (6 HSPs)
chr7 (40-305)||(307008-307273)
chr7 (88-305)||(2826893-2827110)
chr7 (88-130)||(39719824-39719866)
chr7 (88-130)||(46211836-46211878)
chr7 (88-130)||(48609265-48609307)
chr7 (88-130)||(758774-758816)
[»] scaffold0049 (1 HSPs)
scaffold0049 (88-305)||(15216-15428)
[»] chr2 (1 HSPs)
chr2 (88-299)||(5382320-5382526)
[»] chr4 (2 HSPs)
chr4 (88-305)||(13768742-13768947)
chr4 (89-130)||(43892682-43892723)
[»] chr5 (3 HSPs)
chr5 (88-299)||(39685312-39685531)
chr5 (88-130)||(13517442-13517484)
chr5 (88-130)||(17769136-17769178)
[»] chr8 (2 HSPs)
chr8 (88-130)||(4072387-4072429)
chr8 (88-130)||(41323341-41323383)
[»] chr6 (2 HSPs)
chr6 (88-130)||(29363704-29363746)
chr6 (88-130)||(34729719-34729761)
[»] chr3 (3 HSPs)
chr3 (88-130)||(46823748-46823790)
chr3 (88-129)||(17653148-17653189)
chr3 (88-130)||(21295876-21295918)
[»] chr1 (2 HSPs)
chr1 (88-130)||(10620007-10620049)
chr1 (88-130)||(15757620-15757662)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 40 - 305
Target Start/End: Complemental strand, 307273 - 307008
Alignment:
Q  40 tacttataacccagatatgtatgaagattcagttaataacagttaataacaattgtaggcccacacactctcaacccaccagcaccacacaattaataaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307273 tacttataacccagatatgtatgaagattcagttaataacagttaataacaattgtaggcccacacactctcaacccaccagcaccacacaattaataaa 307174  T
Q  140 acaatgatggctttaacctttcacttttcacgatcacaatacaattacagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaac 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307173 acaatgatggctttaacctttcacttttcacgatcacaatacaattacagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaac 307074  T
Q  240 agcaacaactaacatcaagcaagtagcaacataattagattcgattgatctcaattcacacaggtt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  307073 agcaacaactaacatcaagcaagtagcaacataattagattcgattgatctcaattcacacaggtt 307008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 88 - 305
Target Start/End: Original strand, 2826893 - 2827110
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacacaattaataaaacaatgatggctttaacctttcacttttcacgatcacaatacaattac 187  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2826893 acaattgtaggcctacacactctcaacccaccagcaccacacaattaataaaacaatgatggctttaacctttcacttttcacgatcacaatacaattac 2826992  T
Q  188 agagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatcaagcaagtagcaacataattagattcgattga 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  2826993 agagtacaatggaatagaagagaagagccacaaacaacatggtgacctacacaacaacaactaacatcaaacaagtagcaacataattagattcgattga 2827092  T
Q  288 tctcaattcacacaggtt 305  Q
    ||||||||||||||||||    
T  2827093 tctcaattcacacaggtt 2827110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 39719824 - 39719866
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  39719824 acaattgtaggcccacacactctcagcccaccagcaccacaca 39719866  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 46211878 - 46211836
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  46211878 acaattgtaggcccacacactctcagcccaccagcaccacaca 46211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 48609307 - 48609265
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  48609307 acaattgtaggctcacacactctcaacccaccagcaccacaca 48609265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 758774 - 758816
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||| |||||||||||||||||||| ||||||||||| |||||    
T  758774 acaaatgtaggcccacacactctcagcccaccagcacaacaca 758816  T

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Target: scaffold0049 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 88 - 305
Target Start/End: Original strand, 15216 - 15428
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacacaattaataaaacaatgatggcttt--aacctttcacttttcacgatcacaatacaatt 185  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||  ||| ||||||||||||| ||||||||||||||    
T  15216 acaattgtaggcccacacactctcagcccaccagcaccacacaattaataaaacaaggatgactttttaacttttcacttttcacaatcacaatacaatt 15315  T
Q  186 acagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatcaagcaagtagcaacataattagattcgatt 285  Q
    |||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||    
T  15316 acacggtacgatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatca-------aacaacataattagattcgatt 15408  T
Q  286 gatctcaattcacacaggtt 305  Q
    ||| | ||||||||||||||    
T  15409 gatgttaattcacacaggtt 15428  T

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Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 5382526 - 5382320
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacacaattaataaaacaatgatggcttt--aacctttcacttttcacgatcacaatacaatt 185  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||| ||||  ||| ||||| ||||||| ||||||||||||||    
T  5382526 acaattgtaggctcacacactctcagcccaccagcatcacacaattaataaaacaaggatgactttttaacttttcatttttcacaatcacaatacaatt 5382427  T
Q  186 acagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatcaagcaagtagcaacataattagattcgatt 285  Q
    ||| | ||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||       | ||||||||||||||||||||    
T  5382426 acacaatacgatggaatagaagagaagagtcacaaacgacatggtgacctaaacagcaacaactaacatca-------aacaacataattagattcgatt 5382334  T
Q  286 gatctcaattcaca 299  Q
    ||||||||||||||    
T  5382333 gatctcaattcaca 5382320  T

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Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 88 - 305
Target Start/End: Original strand, 13768742 - 13768947
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacacaattaataaaacaatgatggc--tttaacctttcacttttcacgatcacaatacaatt 185  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||  |||||| ||| ||||||||| |||||||||||||     
T  13768742 acaattgtaggtccacacactctcagcccacaagcaccacacaattaataaaacaaggatggctttttaactttttacttttcacaatcacaatacaat- 13768840  T
Q  186 acagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatcaagcaagtagcaacataattagattcgatt 285  Q
          |||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||    
T  13768841 ------tacactggaatagaagagaagcgccacaaacgacatggtgatctaaacagcaacaactaacatca-------agcaacataattagattcgatt 13768927  T
Q  286 gatctcaattcacacaggtt 305  Q
    ||||||||||||||||||||    
T  13768928 gatctcaattcacacaggtt 13768947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 43892723 - 43892682
Alignment:
Q  89 caattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  43892723 caattgtaggcccatacattctcagcccaccagcaccacaca 43892682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 299
Target Start/End: Complemental strand, 39685531 - 39685312
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacacaattaataaaacaatgatggcttta----------------acctttcacttttcacg 171  Q
    |||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||                 || |||||||||||||     
T  39685531 acaattgtagacccacaaactctcagcccaccagcaccacacaattaataaaacaaggatgactttttaacttttcacttttcacttttcacttttcaca 39685432  T
Q  172 atcacaatacaattacagagtacaatggaatagaagagaagagccacaaacaacatggtgacctaaacagcaacaactaacatcaagcaagtagcaacat 271  Q
    ||||||||||| ||||| | |||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||       |||||||    
T  39685431 atcacaatacagttacacaataca-tggaatggaagagaagagccacaaacgacatggtgacctaaacatcaacaactaacatcaa-------gcaacat 39685340  T
Q  272 aattagattcgattgatctcaattcaca 299  Q
    ||||||||||||||||||||||||||||    
T  39685339 aattagattcgattgatctcaattcaca 39685312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 13517442 - 13517484
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  13517442 acaattgtaggtccacacactctcagcccaccagcaccacaca 13517484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 17769178 - 17769136
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  17769178 acaattgtaggcccacacgctctcagcccaccagcaccacaca 17769136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 4072429 - 4072387
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  4072429 acaattgtaggcccacacactctcagcccaccagcaccacaca 4072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 41323383 - 41323341
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  41323383 acaattgtaggtccacacactctcagcccaccagcaccacaca 41323341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 29363746 - 29363704
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  29363746 acaattgtaggcccacacactctcagcccaccagcaccacaca 29363704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 34729719 - 34729761
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  34729719 acaattgtaggctcacacactctcaacccaccagcaccacaca 34729761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 46823748 - 46823790
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  46823748 acaattgtaggcccacacactctcagcccaccagcaccacaca 46823790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 17653189 - 17653148
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacac 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  17653189 acaattgtaggcccacacactttcaacccaccagcaccacac 17653148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 21295876 - 21295918
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  21295876 acaattgtaggcccacacgctctcagcccaccagcaccacaca 21295918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 10620007 - 10620049
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  10620007 acaattgtaggcccacacgctctcagcccaccagcaccacaca 10620049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 15757620 - 15757662
Alignment:
Q  88 acaattgtaggcccacacactctcaacccaccagcaccacaca 130  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  15757620 acaattgtaggcccacacgctctcagcccaccagcaccacaca 15757662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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