View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_27 (Length: 292)

Name: NF7240_low_27
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_27
NF7240_low_27
[»] chr2 (8 HSPs)
chr2 (5-277)||(28178840-28179109)
chr2 (227-277)||(28171077-28171127)
chr2 (92-152)||(28160364-28160424)
chr2 (63-132)||(28174125-28174193)
chr2 (215-271)||(28168889-28168945)
chr2 (154-221)||(28169010-28169078)
chr2 (63-136)||(28177153-28177228)
chr2 (216-271)||(28158369-28158424)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 28179109 - 28178840
Alignment:
Q  5 tgtcgaagaatatcataactgattttgcgaatgttgtgtcctttcgattaaagtacatatataatataacaagagacaaaataaaccaaagaaagtgagt 104  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28179109 tgtcgaataaaatcataactgattttgcgaatgttgtgtcctttcgattaatgtacatatataatataacaagagacaaaataaaccaaagaaagtgagt 28179010  T
Q  105 tattagacaatcaatatcataattgaaccattaatctttttggtacagattgattctccttttcactatacatacatatataataagttcatttttgtta 204  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  28179009 tattagacaatcaatatcagaattgaaccattaatccttttggtacagattgattctccttttcactatacatacata---cataagttcatttttgtta 28178913  T
Q  205 tttgattatgatgccactacctaccttgagggcattgttggaatcttcagggagaagaatgttgagaagaaag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28178912 tttgattatgatgccactacctaccttgagggcattgttggaatcttcagggagaagaatgttgagaagaaag 28178840  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 28171127 - 28171077
Alignment:
Q  227 accttgagggcattgttggaatcttcagggagaagaatgttgagaagaaag 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28171127 accttgagggcattgttggaatcttcagggagaagaatgttgagaagaaag 28171077  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 28160424 - 28160364
Alignment:
Q  92 aaagaaagtgagttattagacaatcaatatcataattgaaccattaatctttttggtacag 152  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  28160424 aaaggaagtgagttattagacaatcaatatcctaattgaaccattaagctttttggtacag 28160364  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 132
Target Start/End: Complemental strand, 28174193 - 28174125
Alignment:
Q  63 atataatataacaagagacaaaataaaccaaagaaagtgagttattagacaatcaatatcataattgaac 132  Q
    ||||||||||||| ||||||||| | ||||||||||||  |||||||||||| |||||||  ||||||||    
T  28174193 atataatataacaggagacaaaa-agaccaaagaaagtatgttattagacaaccaatatcccaattgaac 28174125  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 28168945 - 28168889
Alignment:
Q  215 atgccactacctaccttgagggcattgttggaatcttcagggagaagaatgttgaga 271  Q
    |||||||||| | ||||||| | ||||||||||||||||| ||||| ||||||||||    
T  28168945 atgccactacttgccttgagtggattgttggaatcttcagcgagaacaatgttgaga 28168889  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 28169078 - 28169010
Alignment:
Q  154 ttgattctccttttcactatacatacata-tataataagttcatttttgttatttgattatgatgccac 221  Q
    |||||||||||||||||||||||||||||  |  ||| | || |||||||||||||||||| |||||||    
T  28169078 ttgattctccttttcactatacatacatacaagcataggatcgtttttgttatttgattataatgccac 28169010  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 28177228 - 28177153
Alignment:
Q  63 atataatataacaagagacaaaataaaccaa--agaaagtgagttattagacaatcaatatcataattgaaccatt 136  Q
    ||||||||||||| |||||||||  | | ||  |||||||| |||||||||||| ||||||| |||||||||||||    
T  28177228 atataatataacaggagacaaaaagagcaaagaagaaagtgtgttattagacaaccaatatcctaattgaaccatt 28177153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 28158424 - 28158369
Alignment:
Q  216 tgccactacctaccttgagggcattgttggaatcttcagggagaagaatgttgaga 271  Q
    ||||||||| | ||||||| | ||||||||||||||||| ||||| ||||||||||    
T  28158424 tgccactacttgccttgagtggattgttggaatcttcagcgagaacaatgttgaga 28158369  T

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