View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7240_low_28 (Length: 286)
Name: NF7240_low_28
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 3021206 - 3021468
Alignment:
| Q |
7 |
tttggtgttgatgccattggtgcttctgattcatttttctctttgaactttgaaatgcctttaagaatagatttgagagagttgtaattcatgtatgctt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021206 |
tttggtgttgatgccattggtgtttctgattcatttttctctttgaactttgaaatgcctttaagaatagatttgagagagttgtaattcatgtatgctt |
3021305 |
T |
|
| Q |
107 |
cttgccattctggcaccatttgtgacacaaatcctttcccaaacttca-nnnnnnnnncaagtgagaaacttatgctcttgatcnnnnnnntagatggat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
3021306 |
cttgccattctggcaccatttgtgacacaaattctttcccaaacttcattttttttctcaagtgagaaacttatgcttttgatcaaaaaaatagatggat |
3021405 |
T |
|
| Q |
206 |
ttcaattttcaatgaagnnnnnnnagagttgcatttctaagatgcaatgatgatatatagatt |
268 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021406 |
ttcaattttcaatgaagtttttttagagttgcatttctaagatgcaatgatgatatatagatt |
3021468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 3011148 - 3011295
Alignment:
| Q |
7 |
tttggtgttgatgccattggtgcttctgattcatttttctctttgaactttgaaatgcctttaagaatagatttgagagagttgtaattcatgtatgctt |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| ||||| |||||| || |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3011148 |
tttggtgttgatgccgttggtgcttctgatttatttttccttttgatctttgacatctcttttagaatagatttgagagagctgtaattcatgtatgctt |
3011247 |
T |
|
| Q |
107 |
cttgccattctggcaccatttgtgacacaaatcctttcccaaacttca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3011248 |
cttgccattctggcaccatttgtgacacaaattctttcccaaacttca |
3011295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 3039528 - 3039675
Alignment:
| Q |
7 |
tttggtgttgatgccattggtgcttctgattcatttttctctttgaactttgaaatgcctttaagaatagatttgagagagttgtaattcatgtatgctt |
106 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| |||||| | ||| |||| |||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
3039528 |
tttggtgttgatgccactggtgcttttgattcattttcctctttaaactttaacatgtcttttagaatagacttgagagagttgtaattcatgtatactt |
3039627 |
T |
|
| Q |
107 |
cttgccattctggcaccatttgtgacacaaatcctttcccaaacttca |
154 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
3039628 |
cttgccattctggtacaatttgtgacacaaattctttcccaaacttca |
3039675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 20057964 - 20057817
Alignment:
| Q |
7 |
tttggtgttgatgccattggtgcttctgattcatttttctctttgaactttgaaatgcctttaagaatagatttgagagagttgtaattcatgtatgctt |
106 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| |||||| | ||| |||| | |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
20057964 |
tttggtgttgatgccactggtgcttttgattcattttgctctttaaactttaacatgtcttttaaaatagacttgagagagttgtaattcatgtatactt |
20057865 |
T |
|
| Q |
107 |
cttgccattctggcaccatttgtgacacaaatcctttcccaaacttca |
154 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
20057864 |
cttgccattctggtacaatttgtgacacaaattctttcccaaacttca |
20057817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University