View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_3 (Length: 692)
Name: NF7240_low_3
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 143 - 424
Target Start/End: Original strand, 48569141 - 48569421
Alignment:
| Q |
143 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
242 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
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| Q |
243 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaa |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48569241 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaa |
48569340 |
T |
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| Q |
342 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaattgattatgaatt |
424 |
Q |
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| T |
48569341 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 48569420 - 48569638
Alignment:
| Q |
449 |
ttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
548 |
Q |
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| T |
48569420 |
ttcctttgctgaaatcttccgatataaattcttcttca------agtcccaagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtt |
48569513 |
T |
|
| Q |
549 |
tgggtgacagaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgacggctgtttagttaaatgtatt |
648 |
Q |
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| T |
48569514 |
tgggtgacaaaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattggctgatgacggctgtttggttaaatgtatt |
48569613 |
T |
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| Q |
649 |
tcaaatgagtttatttaattacatc |
673 |
Q |
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| T |
48569614 |
tcaaatgagtttatttaattacatc |
48569638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
| Q |
12 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
84 |
Q |
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| T |
48569018 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 9e-41; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 431 - 627
Target Start/End: Complemental strand, 10821612 - 10821422
Alignment:
| Q |
431 |
attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttcgtcatgatcaagtcccaagtaattgctaaaaacaagtttgactttaga |
530 |
Q |
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| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttcttca------aatcacaagtaattgctaaaaacaagttcgacattggc |
10821519 |
T |
|
| Q |
531 |
aaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcccgagcaggcagacttttttaacaaaattatcattagctgatgac |
627 |
Q |
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| T |
10821518 |
aaatgcgaggactttgtttgggtgactaaggatgaattgattgagtattttccagagcaagctgagtttttaaacaaaatgatcattagctgatgac |
10821422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 149 - 335
Target Start/End: Complemental strand, 10821937 - 10821749
Alignment:
| Q |
149 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
248 |
Q |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
|
| Q |
249 |
atgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
335 |
Q |
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| T |
10821837 |
aagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 498 - 627
Target Start/End: Original strand, 36145837 - 36145966
Alignment:
| Q |
498 |
caagtaattgctaaaaacaagtttgactttagaaaatgcgaggattttgtttgggtgacagaggatgaattgatggagtattttcccgagcaggcagact |
597 |
Q |
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| T |
36145837 |
caagtaattgctaaaaacaagttcgacattggcaaaggtgaggactttgtttgggtgactaaggatgaattgatggagtattttcctgagcaagctgagt |
36145936 |
T |
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| Q |
598 |
tttttaacaaaattatcattagctgatgac |
627 |
Q |
| |
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|||| |||||||| |||||||||||||||| |
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| T |
36145937 |
ttttaaacaaaatgatcattagctgatgac |
36145966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
| Q |
149 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
248 |
Q |
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| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
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| Q |
249 |
atgaagaccattcaggatcctcatcttttaaggtat |
284 |
Q |
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| T |
36145549 |
aagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
14 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
77 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
14 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
77 |
Q |
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| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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