View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_31 (Length: 276)
Name: NF7240_low_31
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_31 |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 22533835 - 22534080
Alignment:
| Q |
22 |
aaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaacc |
121 |
Q |
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| T |
22533835 |
aaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaacc |
22533934 |
T |
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| Q |
122 |
cacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcacccttcctaa |
221 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22533935 |
cacaattgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcacccttcctaa |
22534034 |
T |
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| Q |
222 |
ggatccttactaccagttgtgggacaacgtagttcccaatattctt |
267 |
Q |
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| T |
22534035 |
ggatccttaccaccagttgtgggacaacgtagttcccaatattctt |
22534080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 22526031 - 22525786
Alignment:
| Q |
22 |
aaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaacc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22526031 |
aaacttctgatgcagttgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaaccggtctgcaagaaacc |
22525932 |
T |
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| Q |
122 |
cacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcacccttcctaa |
221 |
Q |
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| T |
22525931 |
cacacttgtcatcggaattccttatagatgatctcgattccaattttgtacacttccctcttgctcatttactggaaaacctttccatcacccttcctaa |
22525832 |
T |
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| Q |
222 |
ggatccttactaccagttgtgggacaacgtagttcccaatattctt |
267 |
Q |
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| T |
22525831 |
ggatccttactaccggttgtgggacaaggtagttcccattattctt |
22525786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 7312115 - 7312042
Alignment:
| Q |
49 |
agtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
122 |
Q |
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| T |
7312115 |
agtaagtcttggaacactattatctctgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7312042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 7327399 - 7327471
Alignment:
| Q |
50 |
gtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
122 |
Q |
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| T |
7327399 |
gtaagtcttggaacactattatttctgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7327471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 7306983 - 7306911
Alignment:
| Q |
50 |
gtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaaccc |
122 |
Q |
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| T |
7306983 |
gtaagtcttggaacactattatttccgatcctaaattcatcaaaatgcacctcaatagatctgcacgaaaccc |
7306911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 7789 - 7870
Alignment:
| Q |
38 |
tgaaatgcgtcagtaagtcctggaaaaccattatctctgatcctaaattcgccaaaatgcaccttaatcggtctgcaagaaa |
119 |
Q |
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|||| |||||||||||||| |||||||| |||||||| ||||| |||| |||||||||||||| ||| |||||| |||| |
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| T |
7789 |
tgaagtgcgtcagtaagtcatggaaaactcttatctctcatcctccattcatcaaaatgcaccttagtcgatctgcacgaaa |
7870 |
T |
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