View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_32 (Length: 270)
Name: NF7240_low_32
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 24556423 - 24556668
Alignment:
| Q |
13 |
aatatgaaaaataagaccccaa----ttattttgacttctaagatcaactctacaattgttttataattgagccatattctgatctatttggcttattaa |
108 |
Q |
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| T |
24556423 |
aatatgaaaaataagaccccaaccaattattttgacttctaagatcaactctacaattgttttataattgagccatattctgatctatttggcttattaa |
24556522 |
T |
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| Q |
109 |
actggatgtcatccataattgttttacaatct-aattcaaaaataatatttgtgatacccgttaccaagatcatcggagtgcattatacaaacctcaaag |
207 |
Q |
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| T |
24556523 |
agtgaatgtcatccataatttttatacaatcttaattcaaaaataatatttgtgatacccgttaccaagatcaacggagtgcattatacaaacctcaaag |
24556622 |
T |
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| Q |
208 |
ttcacacttgaagcttcatatgacactaagccatcattgtcatcac |
253 |
Q |
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| T |
24556623 |
ttcacacttgaagcttcatatgacactaagccatcattgtcatcac |
24556668 |
T |
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Back To:
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 36555482 - 36555391
Alignment:
| Q |
69 |
tttataattgagccatattctgatctatttggcttattaaactggatgtcatccataattgttttacaatctaattcaaaaataatatttgt |
160 |
Q |
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| T |
36555482 |
tttataatagaaacatattctaatctatttggcttatcaaagtgaatgccatccaccatttttatactatctaattcaaaaatcacatttgt |
36555391 |
T |
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