View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_34 (Length: 259)
Name: NF7240_low_34
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 10150889 - 10151119
Alignment:
| Q |
17 |
atgtaggttgaaccagatgaagtgaatgcattagcacaactaatgacatggaaaacagcagtagcaaatttaccatatggtggtgccaaaggagggatag |
116 |
Q |
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| T |
10150889 |
atgtaggttgaaccagatgaagtgaatgcattagcacaactaatgacatggaaaacagcagtagcaaatttaccatatggtggtgccaaaggagggatag |
10150988 |
T |
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| Q |
117 |
gggttgacccttcagagttaagtgcttctgagttagaaaggcttaccagagtttttactcagaagattcatgatcttattggagttcatactgatgtgcc |
216 |
Q |
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| T |
10150989 |
gggttgacccttcagagttaagtgcttctgagttagaaaggcttactagagtttttactcagaagattcatgatcttattggagttcatactgatgtgcc |
10151088 |
T |
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| Q |
217 |
tgcacctgatatgggaacaggaccacaggtt |
247 |
Q |
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| T |
10151089 |
tgcacctgatatgggaacaggaccacaggtt |
10151119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 33196846 - 33197073
Alignment:
| Q |
20 |
taggttgaaccagatgaagtgaatgcattagcacaactaatgacatggaaaacagcagtagcaaatttaccatatggtggtgccaaaggagggatagggg |
119 |
Q |
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| T |
33196846 |
taggttgatccagatgaagtgaatgctttagcgcaactaatgacatggaaaacagctgtagcaaatataccatatggtggtgccaaaggagggatagggt |
33196945 |
T |
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| Q |
120 |
ttgacccttcagagttaagtgcttctgagttagaaaggcttaccagagtttttactcagaagattcatgatcttattggagttcatactgatgtgcctgc |
219 |
Q |
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| T |
33196946 |
gtaacccctcagaattaagtatatccgagttagaaagacttaccagagtttttactcagaaaattcatgatctaattggaactcacatggatgttcctgc |
33197045 |
T |
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| Q |
220 |
acctgatatgggaacaggaccacaggtt |
247 |
Q |
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| T |
33197046 |
acctgatatgggaacaggaccacaggtt |
33197073 |
T |
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