View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_36 (Length: 243)
Name: NF7240_low_36
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 35407561 - 35407788
Alignment:
| Q |
16 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacannnnnnnncaaaagaaataaaggattaaattactataaattttaggtcatga |
115 |
Q |
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| T |
35407561 |
aatatcattaccaaataaatgtcaaataattgagtattgattcttacattttttttcaaaagaaataaaggattaaattactataaattttaggtcataa |
35407660 |
T |
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| Q |
116 |
ctaatatttagttaatgtcatcaatttnnnnnnngtgtgtgattactttaccatatgacactnnnnnnnntgtttttggagaaacagaagattcaacctc |
215 |
Q |
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| T |
35407661 |
ctaatatttagttaatgtcatcaatttaaaaaaagtgtgtgattactttacc--atgacactaaaaaaaatgtttttggagaaacagaagattcaacctc |
35407758 |
T |
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| Q |
216 |
aactgtttgatacactc--tatattatttt |
243 |
Q |
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| T |
35407759 |
aactgtttgatacactcattatattatttt |
35407788 |
T |
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