View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_38 (Length: 239)

Name: NF7240_low_38
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_38
NF7240_low_38
[»] chr4 (2 HSPs)
chr4 (122-221)||(9200228-9200327)
chr4 (122-217)||(9201990-9202085)
[»] scaffold0135 (1 HSPs)
scaffold0135 (122-217)||(72-167)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 9200228 - 9200327
Alignment:
Q  122 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacatacgtagcaatttgatacccaaactcccttgtaaacatagaa 221  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||| |||  ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  9200228 atacctcttctctatcataacttcatgttcgttttcgtttggatcactcaatgttacatatgtagaaatttgatacccaaactcccttgtaaacatagaa 9200327  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 9201990 - 9202085
Alignment:
Q  122 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacatacgtagcaatttgatacccaaactcccttgtaaacat 217  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||  ||||||| |||| ||||| ||||||||||||||||||||||||    
T  9201990 atacctcttctctatcataacttcatgttcgtttccgtttggatcactcaatgttacatatgtagaaatttaatacccaaactcccttgtaaacat 9202085  T

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Target: scaffold0135 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 72 - 167
Alignment:
Q  122 ataccttttctctatcataacttcatgttcgtttctgtttggatcacacaagtttacatacgtagcaatttgatacccaaactcccttgtaaacat 217  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||| |||  ||||||| |||| ||||| ||||||||||||||||||||||||    
T  72 atacctcttctctatcataacttcatgttcgtttccgtttggatcactcaatgttacatatgtagaaatttaatacccaaactcccttgtaaacat 167  T

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