View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_4 (Length: 659)
Name: NF7240_low_4
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 15 - 659
Target Start/End: Original strand, 43802131 - 43802775
Alignment:
| Q |
15 |
tcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcat |
114 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802131 |
tcactgatgcaccaaccgatcgatccctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcat |
43802230 |
T |
|
| Q |
115 |
ttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttgg |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802231 |
ttgaaacttccgcaacggttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttgg |
43802330 |
T |
|
| Q |
215 |
ggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtg |
314 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802331 |
ggcgaacaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtg |
43802430 |
T |
|
| Q |
315 |
ccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802431 |
ccacgcgagtcaacacaagattctacagtgcatggttatttcataaagaaaaaaacaagaataattttgaatttatgggcaataggaagagattctgcga |
43802530 |
T |
|
| Q |
415 |
tctggtctaataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttgg |
514 |
Q |
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| T |
43802531 |
tctggtctaataatgctgaagaattttttccggagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttgg |
43802630 |
T |
|
| Q |
515 |
tcgaagaggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaattggtacattgcttttcttgggagcttccctcgaatatg |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43802631 |
tcgaagaggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaattggtacattgctttacttgggagcttccctcgaatatg |
43802730 |
T |
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| Q |
615 |
actccaaatgatttagacatgactgaaaagtttggtctctcaacc |
659 |
Q |
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| T |
43802731 |
actccaaatgatttagacatgactgaaaagtttggtctctcaacc |
43802775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 657
Target Start/End: Original strand, 43812700 - 43813342
Alignment:
| Q |
15 |
tcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacatgattgccggggcat |
114 |
Q |
| |
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||||||| |||||| |||| |||| |||||||||| ||| ||||||| |||||||||||||||||||||||||| || |||||||||| |||| ||||| |
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| T |
43812700 |
tcactgacgcaccagacgattgatccctctgacgaacaaagccatgtcattgatcgaacaaacataaaggctatagccttagacatgatcgccgcggcat |
43812799 |
T |
|
| Q |
115 |
ttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagctagataacgtggttgg |
214 |
Q |
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|||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| |
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| T |
43812800 |
ttgacacttctgcaaccattgtggagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatctccaacaagagctggatagtgtagttgg |
43812899 |
T |
|
| Q |
215 |
ggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtg |
314 |
Q |
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| ||| |||||||| || || |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||| |
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| T |
43812900 |
gatgaacaaattagtggaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctgcaggaccacttgtg |
43812999 |
T |
|
| Q |
315 |
ccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcga |
414 |
Q |
| |
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|| |||||||||||| | ||| ||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| || |
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| T |
43813000 |
ccgcgcgagtcaacagaggatgctacagttcatggttatttcataaagaaaaaaacaagagtaattgtgaatttgtgggcaataggaagagattctaaga |
43813099 |
T |
|
| Q |
415 |
tctggtctaataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccgcggacatgatttccaatttataccatttggttttgg |
514 |
Q |
| |
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| |||||||||||||| |||||||||| |||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
43813100 |
tatggtctaataatgccgaagaattttatccagagagatttgtggataaaaacttcgactaccgtggacatgatttccaatttataccatttggtttcgg |
43813199 |
T |
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| Q |
515 |
tcgaagaggatgtcctggaataaacttgggactaactacagttaaacttgttgttgctcaattggtacattgcttttcttgggagcttccctcgaatatg |
614 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |
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| T |
43813200 |
tcgaagaggatgtcctggaataaacttgggactagctacagttaaacttgttgttgctcaattgatacattgcttttcttggaagcttccctcaaatatg |
43813299 |
T |
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| Q |
615 |
actccaaatgatttagacatgactgaaaagtttggtctctcaa |
657 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43813300 |
actataaatgatttagacatgactgaaaagtttggtctctcaa |
43813342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 480 - 657
Target Start/End: Complemental strand, 31950543 - 31950366
Alignment:
| Q |
480 |
ggacatgatttccaatttataccatttggttttggtcgaagaggatgtcctggaata-aacttgggactaactacagttaaacttgttgttgctcaattg |
578 |
Q |
| |
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||||||||||| ||| ||||||||||||| | ||||| ||||| || |||||||| |||| ||| |||| ||| |||| ||||||||||| |||||| |
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| T |
31950543 |
ggacatgattttcaacttataccatttgggtcgggtcgtagagggtgccctggaattcaactaggg-ctaaatactgttaggcttgttgttgcccaattg |
31950445 |
T |
|
| Q |
579 |
gtacattgcttttcttgggagcttccctcgaatatgactccaaatgatttagacatgactgaaaagtttggtctctcaa |
657 |
Q |
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| T |
31950444 |
gtacattgctttgattgggaacttccctttggtatgtctcctaatgatttggatatgagtgaaaaatttggactctcaa |
31950366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 480 - 535
Target Start/End: Original strand, 31890728 - 31890783
Alignment:
| Q |
480 |
ggacatgatttccaatttataccatttggttttggtcgaagaggatgtcctggaat |
535 |
Q |
| |
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||||||||||| ||| | |||||||||||||||||||||||| | ||||||||||| |
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| T |
31890728 |
ggacatgattttcaactcataccatttggttttggtcgaagaagttgtcctggaat |
31890783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
138 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
187 |
Q |
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| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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