View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_40 (Length: 237)
Name: NF7240_low_40
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_40 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 59930 - 60152
Alignment:
| Q |
1 |
aaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59930 |
aaatgattaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttggg |
60029 |
T |
|
| Q |
101 |
tcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60030 |
tcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatg |
60129 |
T |
|
| Q |
201 |
ccaaatcttttccatgtcatccc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
60130 |
ccaaatcttttccatgtcatccc |
60152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 8689063 - 8688847
Alignment:
| Q |
7 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
106 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||||||||| ||||||| |
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| T |
8689063 |
ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcatct |
8688964 |
T |
|
| Q |
107 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
206 |
Q |
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| T |
8688963 |
tctcacgattggccttagggttgagaggagcctcagttaaaagcactgggtgttcttctggggcgacacgaagctcattgtagaaggtgtgatgccaaat |
8688864 |
T |
|
| Q |
207 |
cttttccatgtcatccc |
223 |
Q |
| |
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||||||||||||||||| |
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| T |
8688863 |
cttttccatgtcatccc |
8688847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 37051120 - 37051336
Alignment:
| Q |
7 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
106 |
Q |
| |
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||||| |||||||||||||| || || || ||||| || || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| | |
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| T |
37051120 |
ttaccagttgtacgaccactcgcataaagggaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcattt |
37051219 |
T |
|
| Q |
107 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
206 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||| || | || || || || ||||| || || |||||||| ||||| ||||| ||||||||||| || |
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| T |
37051220 |
tctcacgattagccttaggattaagaggtgcttcagtaagaaggacagggtgttcttcaggagcaacacgaagttcattgtagaaagtatgatgccagat |
37051319 |
T |
|
| Q |
207 |
cttttccatgtcatccc |
223 |
Q |
| |
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||| ||||| ||||||| |
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| T |
37051320 |
cttctccatatcatccc |
37051336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 41387870 - 41387656
Alignment:
| Q |
9 |
accggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttc |
108 |
Q |
| |
|
||||||||| ||||||||||| ||||| || |||||||||||||| || |||||||||||||| | ||||| ||||||||||| ||||| ||||| ||| |
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| T |
41387870 |
accggttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcattttc |
41387771 |
T |
|
| Q |
109 |
tcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatct |
208 |
Q |
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|||||||||||||||||||| || || ||||| || | | ||| || ||||| || ||||| ||||| || ||||| || ||||||||||||||||||| |
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| T |
41387770 |
tcacgattagcctttggattgagcggtgcttcagtgagcaaaaccgggtgctcctctggggccacacggagttcattgtaaaaggtatgatgccaaatct |
41387671 |
T |
|
| Q |
209 |
tttccatgtcatccc |
223 |
Q |
| |
|
| ||||||||||||| |
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| T |
41387670 |
tctccatgtcatccc |
41387656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 215
Target Start/End: Original strand, 1263001 - 1263158
Alignment:
| Q |
58 |
acatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcacgattagcctttggattaagaggagcttctgttaagagaactggat |
157 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||| || ||||||||||| || | ||| || || ||||| || ||||| || || | || || || | |
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| T |
1263001 |
acatacattgcaggcacattgaaagtctcgaacataatctgggtcatcttttctctattggctttaggattgagtggagcctcagtaagaagcacagggt |
1263100 |
T |
|
| Q |
158 |
gctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttccat |
215 |
Q |
| |
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| |||||||| || ||||||||||||||||| || || |||||||||||||||||||| |
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| T |
1263101 |
gttcttcgggagcaacacgaagctcattataaaatgtgtgatgccaaatcttttccat |
1263158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 67409 - 67193
Alignment:
| Q |
7 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatct |
106 |
Q |
| |
|
|||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| || || ||||| | |
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|
| T |
67409 |
ttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcattt |
67310 |
T |
|
| Q |
107 |
tctcacgattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaat |
206 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| || | ||||| ||||| ||||| || || |||||||||||||| ||||| || |||||||| || |
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| T |
67309 |
tctcacgattagccttaggattaagtggtgcttcagtgagaagaacaggatgttcttcaggagccacacgaagctcattgtagaaagtgtgatgccagat |
67210 |
T |
|
| Q |
207 |
cttttccatgtcatccc |
223 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
67209 |
cttttccatatcatccc |
67193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 43647576 - 43647786
Alignment:
| Q |
13 |
gttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcatcttctcac |
112 |
Q |
| |
|
|||||||||||||| || ||||| || || || ||||| |||||||||||||| ||||| ||||||| ||||| |||||||||||||||||||| || | |
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| T |
43647576 |
gttgtacgaccacttgcatagagggagaggacagcctggatggccacatacatggcaggcacattgaaggtctcgaacatgatttgggtcatcttttctc |
43647675 |
T |
|
| Q |
113 |
gattagcctttggattaagaggagcttctgttaagagaactggatgctcttcgggggcgacacgaagctcattatagaaggtatgatgccaaatcttttc |
212 |
Q |
| |
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|| |||||||||||||| ||||| || |||| || ||||| ||||| ||||| || ||||| | ||||| || || || |||||||| ||||| || |
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|
| T |
43647676 |
tgttggcctttggattaagtggagcctcagttagaagtactgggtgctcctcgggagcaacacgcaattcattgtaaaatgtgtgatgccagatcttctc |
43647775 |
T |
|
| Q |
213 |
catgtcatccc |
223 |
Q |
| |
|
||||||||||| |
|
|
| T |
43647776 |
catgtcatccc |
43647786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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