View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_47 (Length: 221)

Name: NF7240_low_47
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_47
NF7240_low_47
[»] chr1 (1 HSPs)
chr1 (1-207)||(5573994-5574202)
[»] chr8 (3 HSPs)
chr8 (175-207)||(1646400-1646432)
chr8 (175-207)||(33692865-33692897)
chr8 (175-207)||(40570652-40570684)
[»] chr7 (1 HSPs)
chr7 (175-207)||(1709428-1709460)
[»] chr5 (2 HSPs)
chr5 (175-207)||(6458911-6458943)
chr5 (175-207)||(8442303-8442335)
[»] chr4 (1 HSPs)
chr4 (175-207)||(32294647-32294679)
[»] chr3 (2 HSPs)
chr3 (175-207)||(42888668-42888700)
chr3 (175-207)||(43894880-43894912)
[»] chr2 (1 HSPs)
chr2 (175-207)||(12257045-12257077)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 5573994 - 5574202
Alignment:
Q  1 tagtaagtgggcatatttggcaccgtccatgtttgtgggggaacaccactgattttaccatagaacagtgatagtgtttggtgaggaatcaaattcctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573994 tagtaagtgggcatatttggcaccgtccatgtttgtgggggaacaccactgattttaccatagaacagtgatagtgtttggtgaggaatcaaattcctat 5574093  T
Q  101 aaaatatacgcaacattattatgtgactagat-aaagaacaaaaaggacaacaacaatatttgtgaataaag-aacgatatttgaacaacttttttggta 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |  ||||||||||||| |  |||| ||    
T  5574094 aaaatatacgcaacattattatgtgactagataaaagaacaaaaaggacaacaacaatatttgtgaatagagtagtgatatttgaacaattcgtttgata 5574193  T
Q  199 taatttttg 207  Q
    |||||||||    
T  5574194 taatttttg 5574202  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 1646432 - 1646400
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  1646432 gatatttgaacaacttttttgctataatttttg 1646400  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 33692897 - 33692865
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  33692897 gatatttgaacaacttttttgttataatttttg 33692865  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 40570684 - 40570652
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  40570684 gatatttgaacaacttttttgttataatttttg 40570652  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 1709460 - 1709428
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||| |||||||||||||||||    
T  1709460 gatatttgaacaactcttttggtataatttttg 1709428  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 6458943 - 6458911
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  6458943 gatatttgaacaacttttttgctataatttttg 6458911  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 8442335 - 8442303
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||| |||||||||||||||||    
T  8442335 gatatttgaacaactattttggtataatttttg 8442303  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 32294647 - 32294679
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||| |||||||||||||||||    
T  32294647 gatatttgaacaactcttttggtataatttttg 32294679  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 42888668 - 42888700
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  42888668 gatatttgaacaacttttttgttataatttttg 42888700  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 43894880 - 43894912
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    ||||||||||||||||||||| |||||||||||    
T  43894880 gatatttgaacaacttttttgctataatttttg 43894912  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 12257077 - 12257045
Alignment:
Q  175 gatatttgaacaacttttttggtataatttttg 207  Q
    |||||||||||||||||||||||| ||||||||    
T  12257077 gatatttgaacaacttttttggtacaatttttg 12257045  T

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