View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7240_low_5 (Length: 613)

Name: NF7240_low_5
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7240_low_5
NF7240_low_5
[»] chr1 (2 HSPs)
chr1 (20-487)||(35110508-35110970)
chr1 (536-613)||(35110973-35111050)
[»] chr8 (1 HSPs)
chr8 (383-517)||(14744236-14744370)


Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 35110508 - 35110970
Alignment:
Q  20 tgccccacgtgtgacattacataccacacagcagtgtcacatagacggtcaatgatcacatccatcatgttgactaacaaagaaaactcacaaaatttta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  35110508 tgccccacgtgtgacattacataccacacagcagtgtcacatagacggtcaatgatcacatccatcatgttgactaacaaggaaaactcacgaaatttta 35110607  T
Q  120 acaatttcaacggggtttgtatttcattatcctttaaaaatttaatactttggccttttgcaaaatgatcatcaatgattgaatattaaaagtctcagct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35110608 acaatttcaacggggtttgtatttcattatcctttaaaaatttaatactttggccttttgcaaaatgatcatcaatgattgaatattaaaagtctcagct 35110707  T
Q  220 tgatcgtaatgttgtttttagtttgatgcttcattatttaaactagaaagtttgaaataattttgatggacnnnnnnnnnnatctcaaacaaatttttgt 319  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  35110708 tgatcgtaatgttgtgtttagtttgatgcttcattatttaaactagaaagtttgaaataattttgatggac--ttttttttatctcaaacaaatttttgt 35110805  T
Q  320 tacaaattaaaataacaacaatgaacattgtcatgggttgctctcaatggaaaatgaaaagaccagacatcattccgctgacttgaaacaatatctgggc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||| |     
T  35110806 tacaaattaaaataacaacaatgaacattgtcatgggttgctctcaatggaaaatgaaaagaccagacatcattccgcatacttgaaacaataactgagt 35110905  T
Q  420 aattctgatcatcacagttttctagaataactaccccaagaattgtattttgatcaaatatcaatccc 487  Q
    |||||||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35110906 aattctg---atcacagttttgtagaataactaccccaagaattgtattttgatcaaatatcaatccc 35110970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 536 - 613
Target Start/End: Original strand, 35110973 - 35111050
Alignment:
Q  536 caaatcagtctaatatagctaaatcatcctgttacattcagacaactcctttttctatttctggtattttactcaggc 613  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35110973 caaatcagtctaatatagctaaatcatcctgttacattcaaacaactcctttttctatttctggtattttactcaggc 35111050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 517
Target Start/End: Complemental strand, 14744370 - 14744236
Alignment:
Q  383 cagacatcattccgctgacttgaaacaatatctgggcaattctgatca-tcacagttttctagaataactaccccaagaattgtattttgatcaaatatc 481  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||| | | | ||| ||||| |||||||| ||||||||||||||| ||||||||||    
T  14744370 cagacatcattccgcagacttgaaacaataactgagcaattctgatcagttata-tttcctagagtaactacctcaagaattgtattttaatcaaatatc 14744272  T
Q  482 aatccccctaaaaataaattgtcagcaaatcttgtt 517  Q
    |||||||||| |||||||||||||||||||||||||    
T  14744271 aatccccctacaaataaattgtcagcaaatcttgtt 14744236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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