View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7240_low_7 (Length: 463)
Name: NF7240_low_7
Description: NF7240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7240_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 4679917 - 4680201
Alignment:
| Q |
19 |
attagataacttacatagcatttgaaggtgcaagaatgggtatatatggacagttccactgtatcctgtttaattcttttggtgcatttt-ttctatctt |
117 |
Q |
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| T |
4679917 |
attagataacttacatagcatttgaaggtgcatgaatgggtatacatggacagttccactgtatcctgtttaattcttttggtgcatttttttctatctt |
4680016 |
T |
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| Q |
118 |
ttgaactctttataattgtctattcattgaacttgtgctttgattagttgttaattgttattactgtgaattcacacaaactcgcatcaaagcatcaata |
217 |
Q |
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| T |
4680017 |
ttgaactctttataattgtctattcattgaacttgtgatgtgattagttgttaattgttattactgtgaattcacacaaactcgcatcaaagcatcaata |
4680116 |
T |
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| Q |
218 |
ctatgatgtgtggag-aaaaaccaacaacaaccaaaatagtttgagcaatttaaacaaaccaaccaaattgtgtagcaaaacaaa |
301 |
Q |
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| T |
4680117 |
ctatgatgtgtggagcaaaaaccaacaacaaccaaaatagtttgatcaatttaaacaaaccaaccaaattgtgtagcaaaacaaa |
4680201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 311 - 449
Target Start/End: Original strand, 4680253 - 4680391
Alignment:
| Q |
311 |
aattcggctcaaattgacttacgtctagaagatagagaagctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaataac |
410 |
Q |
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| T |
4680253 |
aattcggctcaaattgacttacgtttagaagatagagaagctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaataac |
4680352 |
T |
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| Q |
411 |
ccttcaagtcttcaaccataaaccctaatttacaccctt |
449 |
Q |
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| T |
4680353 |
ccttcaagtcttcaaccataaaccctaatttacaccctt |
4680391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 22097981 - 22097925
Alignment:
| Q |
351 |
ctctctaattcactatcaatgaattttttgcaaagagatataaggattacaagaaat |
407 |
Q |
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| T |
22097981 |
ctctctaatccactatcaatgagttttttacaaatagatacaagggttataagaaat |
22097925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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