View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7241_high_1 (Length: 1184)
Name: NF7241_high_1
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 957; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 957; E-Value: 0
Query Start/End: Original strand, 8 - 1166
Target Start/End: Complemental strand, 8830533 - 8829385
Alignment:
| Q |
8 |
gagatggacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8830533 |
gagaaggacatcaagctacaacaccattccagaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt |
8830434 |
T |
|
| Q |
108 |
ctaagcagctnnnnnnncttgatttatattctaagtgaagagattatgtttaagttgatttcacgtttcatggtcgatttcgtttgagttattatatata |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8830433 |
ctaagcagctaaaaaaacttgatttatattctaagtgaagagattatgtctaagttgatttcacgtttcatggtcgatttcgtttgagttattatatata |
8830334 |
T |
|
| Q |
208 |
tannnnnnnngtgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataattgcaattttgtt |
307 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8830333 |
tattttttt-gtgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcatagagctgtgtttaataattgcaattttgtt |
8830235 |
T |
|
| Q |
308 |
cagtttttattttgacaattttaagttgaaccgatcacctgaactaacccgtaattatcatcaagtttgtttgattcgggtcttctgaccaaatttatca |
407 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8830234 |
cagtttttattttaacaattttaagttgaaccgatcacctgaactaacccgtaattatcatcaagtttgtttgattcgggtcttctgacaaaatttatca |
8830135 |
T |
|
| Q |
408 |
agaactgaaccaaaccaaacacttttcattcgttgcgannnnnnnnctcgtnnnnnnnnnnnncgcatactgaaccgatcgttacacctcaattggtagc |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8830134 |
agaactaaaccaaaccaaacacttttcattcgttgcgattttttttctcgtaaaaaaaaa---cgcaaactgaaccgatcgttacacctcaattggtagc |
8830038 |
T |
|
| Q |
508 |
aggctgcaaatttggtattgaaggaccaaacatataacaaggatgttgttgtcatatctgggaaggggatccgcatactctgttaagataagctaacaag |
607 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8830037 |
aggctgcaaatttggtattgaagggccaaacatataacaaggatgttgttgtcatatctgggaaggggatccgcatactctgttaagataagttaacaag |
8829938 |
T |
|
| Q |
608 |
ctgctaccacacaccaaatttggctccagcaacataaatcagatttttgttgaggccacagttattagtagctcattttgtgcagtgtttgtactcaagt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
8829937 |
ctgctaccacacaccaaatttggctccagcaacataaatcagatttttgttgatgccacagttattagtagctcatcttgtgcagtgtttgttctcaagt |
8829838 |
T |
|
| Q |
708 |
gtaactttttctcctattaattttttgatttggctcattgaaagaaaaatactcaatcgatgatcaagttggtttgaaattctaaataatgttcattaac |
807 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8829837 |
gcaactttttctcctattaattttttgacttggctcattgaaagaaaaatactcaatcgatgatcaagttggtttgaaattctaaataatgttcattaac |
8829738 |
T |
|
| Q |
808 |
ggataatgctctggaatccttgattgcagccttcatttaaacccttttgcgtttcggataatgttgttgttttcgtagaaaaaattgtattccaacttag |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8829737 |
ggataatgctctggaatccttgattgcagccttcatttaaacccttttgcgtttcggataatgttgttgttttcgtagaaaaaattgtattccaatttag |
8829638 |
T |
|
| Q |
908 |
ctcaatatgatgcaaataatggaatgcttgatagattatcctaggattttaggcaaacttgagttggaacttggatctacatgtttaccatgagagtctg |
1007 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8829637 |
ctcaatatgatgcaaataatggaatgcttgatagattatcctaggattttaggcaaacttgagttggaacttggatctacatgtttaccatgagagtctg |
8829538 |
T |
|
| Q |
1008 |
gtatcaacataatggcatctgtggagtcttttaaccatgcagcaattagtttaatataaactataaatagtatgagaggaagtcataataagttttccaa |
1107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8829537 |
gtatcaacataatggcatctgtggagtcttttaaccatgcagcaattagtttaatataaactataaatagtatgagaggaagtc------agttttccaa |
8829444 |
T |
|
| Q |
1108 |
ttcaattcatcatgttgttcacaatacaagcaacactttctcaagacagtggaggggga |
1166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8829443 |
ttcaattcatcatgttgttcacaatacaagcaacactttctcaagacagtggaggggga |
8829385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 9e-30; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 43919005 - 43919163
Alignment:
| Q |
8 |
gagatggacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttattt |
107 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
43919005 |
gagaaggacatcaaactacaacaccactcctgaaggattcaaaagcaagctacaggatgatagttcat-gccaccactatgtgccttgctaagtttattg |
43919103 |
T |
|
| Q |
108 |
ctaagcagctnnnnnnncttgatttatattctaagtgaagagattatgtttaagttgattt |
168 |
Q |
| |
|
||||| ||| |||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
43919104 |
ctaagttgctaaaatat-ttgatttaaattctaagtgcagagattatgtttgagttgattt |
43919163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 43984714 - 43984624
Alignment:
| Q |
14 |
gacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagttta |
104 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
43984714 |
gacataaagctgcaacaccattcctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta |
43984624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 44002722 - 44002632
Alignment:
| Q |
14 |
gacatcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagttta |
104 |
Q |
| |
|
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
44002722 |
gacataaagctgcaacaccattcctgaaggatttaaaagcaagctacatgatgatagtccataaccaccactatgtaccttgctaagttta |
44002632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 43988970 - 43988882
Alignment:
| Q |
17 |
atcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaagtttatt |
106 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
43988970 |
atcaagctacaacagtattcctaaaagatttaaaggcaagctacatgat-atagtccatagctaccactctttgccttgctaagtttatt |
43988882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 43910375 - 43910458
Alignment:
| Q |
17 |
atcaagctacaacaccattcctgaaagatttaaaagcaagctacatgatgatagtccatagtcaccactatgtgccttgctaag |
100 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||||||| ||| || |||||| ||||| |||||||| || |||||||||| |
|
|
| T |
43910375 |
atcaaactacaacaccactcctgaaggatttaaaagcaagccacacgaggatagttcatagccaccactacgttccttgctaag |
43910458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 43993088 - 43993014
Alignment:
| Q |
219 |
tgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataatt |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||| |||||| |
|
|
| T |
43993088 |
tgtgtgattaatttggtttgtactttaagtgattatcaaagtaatagaggca---gcagagagctgtgtttgataatt |
43993014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 669 - 750
Target Start/End: Complemental strand, 19566259 - 19566179
Alignment:
| Q |
669 |
ttattagtagctcattttgtgcagtgtttgtactcaagtgtaactttttctcctattaattttttgatttggctcattgaaa |
750 |
Q |
| |
|
||||| ||||||||| ||||||| || |||| ||| ||||||||||||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
19566259 |
ttatttgtagctcatcttgtgcaatgcttgtgctctagtgtaactttttctcctattaa-tatttgatttggcttattgaaa |
19566179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 43984518 - 43984429
Alignment:
| Q |
219 |
tgtgtgattagtttggtttgtactttaagtcattatcaaagtgatagaggtagaggcagagagctgtgtttaataattgcaattttgttcagt |
311 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||||||| | ||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
43984518 |
tgtgtgattaatttcgtttgtactttaagttattatcaaagtgatagagaca---tcagagctctgtctttaaaaattgcaattttgttcagt |
43984429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 42416228 - 42416291
Alignment:
| Q |
664 |
cacagttattagtagctcattttgtgcagtgtttgtactcaagtgtaactttttctcctattaa |
727 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || ||||| | |||||| ||||||||||||||||| |
|
|
| T |
42416228 |
cacaattattagtagctcatcttgtgcactgcttgtatttaagtgtcactttttctcctattaa |
42416291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 44002595 - 44002555
Alignment:
| Q |
135 |
attctaagtgaagagattatgtttaagttgatttcacgttt |
175 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
44002595 |
attctaggtgaagagattatgtttaagttgatttcatgttt |
44002555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 43984599 - 43984554
Alignment:
| Q |
130 |
tttatattctaagtgaagagattatgtttaagttgatttcacgttt |
175 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
43984599 |
tttacattctaggtgaagagattatgtttaaattgatttcatgttt |
43984554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 43987945 - 43987865
Alignment:
| Q |
230 |
tttggtttgtacttt-aagtcattatcaaagtgatagaggtagaggcag---agagctgtgtttaataattgcaattttgttc |
308 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||| ||| ||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
43987945 |
tttggtttgtacttttaagt--ttatcaaaatgattgagatagaggctgcaaagagctgtgtttaaaaattgcaattttgttc |
43987865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 669 - 740
Target Start/End: Complemental strand, 45569531 - 45569459
Alignment:
| Q |
669 |
ttattagtagctcattttgtgcagtgtttgtactcaagtgtaa-ctttttctcctattaattttttgatttgg |
740 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
45569531 |
ttattagtagctcatcttgtgcactgcttgtactcaagtgtaacctttttctcctattaagtttttgctttgg |
45569459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 601 - 797
Target Start/End: Complemental strand, 44667847 - 44667653
Alignment:
| Q |
601 |
taacaagctgctaccacacaccaaatttggctccagcaacataaatcagatttttgttgaggccacagttattagtagctcattttgtgcagtgtttgta |
700 |
Q |
| |
|
||||||||| | |||||| |||||| ||||||||||| |||||| || |||||||||| | |||| ||||||||||||||| || || | | ||| | |
|
|
| T |
44667847 |
taacaagctccaaccacagaccaaacttggctccagccacataactc--atttttgttgctgtcacaattattagtagctcatcttctgtactttttttg |
44667750 |
T |
|
| Q |
701 |
ctcaagtgtaac--tttttctcctattaattttttgatttggctcattgaaagaaaaatactcaatcgatgatcaagttggtttgaaattctaaataat |
797 |
Q |
| |
|
| |||||| ||| |||||||| ||| ||| ||||||||||||| |||||| || | ||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
44667749 |
cacaagtgcaactttttttctcttatgaatattttgatttggcttcttgaaa-aagattactcaatcaat-tgcaagttggtttgaaattataaataat |
44667653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 601 - 726
Target Start/End: Complemental strand, 44687173 - 44687050
Alignment:
| Q |
601 |
taacaagctgctaccacacaccaaatttggctccagcaacataaatcagatttttgttgaggccacagttattagtagctcattttgtgcagtgtttgta |
700 |
Q |
| |
|
||||||||| | |||||| |||||| ||||||||||| |||||| || |||||||||| | |||| ||||||||||||||| || || | || ||| |
|
|
| T |
44687173 |
taacaagctccaaccacagaccaaacttggctccagccacataactc--atttttgttgctgtcacaattattagtagctcatcttctgtactgcatgtg |
44687076 |
T |
|
| Q |
701 |
ctcaagtgtaactttttctcctatta |
726 |
Q |
| |
|
|||||||| |||||||| | |||||| |
|
|
| T |
44687075 |
ctcaagtgcaacttttttttctatta |
44687050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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