View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_high_11 (Length: 322)

Name: NF7241_high_11
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_high_11
NF7241_high_11
[»] chr3 (1 HSPs)
chr3 (18-306)||(52240369-52240657)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 52240657 - 52240369
Alignment:
Q  18 gcccaaatcattacattctctgttcggtaaaaatagtaagaaacaaggtaaagctatctttggcattcttctttctatctttgtgtgcgaggtttgccac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52240657 gcccaaatcattacattctctgttcggtaaaaatagtaagaaacaaggtaaagctatctttggcattcttctttctatctttgtgtgtgaggtttgccac 52240558  T
Q  118 actgtgataactgtcaatagttttatgtcagattatgataagataaccagaaagtcgagagaagcaaacatggcgaaaagctcaaatagttttgatattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240557 actgtgataactgtcaatagttttatgtcagattatgataagataaccagaaagtcgagagaagcaaacatggcgaaaagctcaaatagttttgatattc 52240458  T
Q  218 ctatgaatccaaagaaggaagatgaaaagcaaaagacagtttctatgagaggtgtagaatatagcaaagctactccccgaggttcatta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52240457 ctatgaatccaaagaaggaagatgaaaagcaaaagacagtttctatgagaggtgtagaatatagcaaagctactccccgaggttcatta 52240369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University