View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_high_18 (Length: 239)
Name: NF7241_high_18
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6944687 - 6944909
Alignment:
| Q |
1 |
tgatcattgatcaactatgtttaccaacatctatcacatttctctgagattactgnnnnnnnattatttaatagttgttcttccttactgtttttcaatt |
100 |
Q |
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| T |
6944687 |
tgatcattgatcaactatgtttaccaacatctatcacatttctctgagattactgtttttttattatttaatagttgttcttccttactgtttttcaatt |
6944786 |
T |
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| Q |
101 |
atttaatagttgttttcatgtagaaatgcaacaaaagatgtctttctgtattaaaaacaaaacaaattctagaaaatgtggttttaggagtttgattact |
200 |
Q |
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| T |
6944787 |
atttaatagttgttttcatgtagaaatgcaacaaaagatgtctttctgtattaaaaacaaaacaaattctagaaaatgtggttttaggagtttgattact |
6944886 |
T |
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| Q |
201 |
attgtgatttgtgagaaacatat |
223 |
Q |
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||||||| ||||||||||||||| |
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| T |
6944887 |
attgtgacttgtgagaaacatat |
6944909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 7474494 - 7474374
Alignment:
| Q |
85 |
ttactgtttttcaattatttaatagttgttttcatgtagaaatgcaacaaaagatgtctttct--gtattaaaaacaaaacaaattctagaaaatgtggt |
182 |
Q |
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||||||| ||| ||||||| |||||||||| ||||||| ||| |||||||||||| |||| | || |||||||||||||||| |||||| || ||||| |
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| T |
7474494 |
ttactgtctttggattatttgatagttgtttgcatgtagcaatacaacaaaagatgcctttatatgtgttaaaaacaaaacaaaatctagataaagtggt |
7474395 |
T |
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| Q |
183 |
tttaggagtttgattactatt |
203 |
Q |
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| T |
7474394 |
tttaggagtttgagtactatt |
7474374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7485263 - 7485219
Alignment:
| Q |
1 |
tgatcattgatcaactatgtttaccaacatctatcacatttctct |
45 |
Q |
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|||| ||||||||| ||| ||||||||||||||||| |||||||| |
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| T |
7485263 |
tgataattgatcaattatctttaccaacatctatcaaatttctct |
7485219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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