View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_high_19 (Length: 222)

Name: NF7241_high_19
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_high_19
NF7241_high_19
[»] chr1 (5 HSPs)
chr1 (1-222)||(6944476-6944697)
chr1 (1-86)||(7494963-7495048)
chr1 (1-92)||(7474606-7474699)
chr1 (4-43)||(7487531-7487570)
chr1 (152-222)||(7474536-7474605)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6944476 - 6944697
Alignment:
Q  1 aactcactttgccaatttcaaattgatgttgattatgctaaatatttctggattcatgagtatgtaccaagcattgctcctttgtcagcatatttagcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6944476 aactcactttgccaatttcaaattgatgttgattatgctaaatatttctggatccatgagtatgtaccaagcattgctcctttgtcagcatatttagcta 6944575  T
Q  101 aggcattagtcacaccaaactgagatatattttgttaatgcatacaatggtgttatttagcataggttttagctgatttgacttactaagaaagaacatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6944576 aggcattagtcacaccaaactgagatatattttgttaatgcatacaatggtgttatttagcataggttttagctaatttgacttactaagaaagaatatc 6944675  T
Q  201 tgcaagggttatgatcattgat 222  Q
    |||||| |||||||||||||||    
T  6944676 tgcaagagttatgatcattgat 6944697  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7495048 - 7494963
Alignment:
Q  1 aactcactttgccaatttcaaattgatgttgattatgctaaatatttctggattcatgagtatgtaccaagcattgctcctttgtc 86  Q
    ||||||||||||||||||||||||||||||||| || || || |||| ||||||||||||||||| |||||||| |||||||||||    
T  7495048 aactcactttgccaatttcaaattgatgttgatgatactgaacatttttggattcatgagtatgtgccaagcatagctcctttgtc 7494963  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7474699 - 7474606
Alignment:
Q  1 aactcactttgccaatttcaaattgatgttgattatgctaaat--atttctggattcatgagtatgtaccaagcattgctcctttgtcagcata 92  Q
    ||||||||||||||||||||||||||||||||||||   | ||  |||||||||||||||||||||| ||||| |||||||| |||||| ||||    
T  7474699 aactcactttgccaatttcaaattgatgttgattatataatatgaatttctggattcatgagtatgtgccaagtattgctcccttgtcaacata 7474606  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 7487570 - 7487531
Alignment:
Q  4 tcactttgccaatttcaaattgatgttgattatgctaaat 43  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  7487570 tcactttaccaatttcaaattgatgttgattatactaaat 7487531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 7474605 - 7474536
Alignment:
Q  152 gttatttagcataggttttagctgatttgacttactaagaaagaacatctgcaagggttatgatcattgat 222  Q
    ||||||| ||||| ||||||||| ||| | |||| ||||||||||||| |||||| ||| |||||||||||    
T  7474605 gttattttgcatatgttttagctaatt-gtcttattaagaaagaacatttgcaagagttgtgatcattgat 7474536  T

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