View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_high_4 (Length: 511)
Name: NF7241_high_4
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 13271077 - 13271451
Alignment:
| Q |
12 |
gatggacatcagtatattcgctgaacatctcaaatcctcccatcatcatatagttgccaaattgttccaaaacatttccaccttcacttggtgtagcaag |
111 |
Q |
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| T |
13271077 |
gatggacatcagtatattcactcgacatctcaaatgctcccatcatcatatagttgccaaattgttccaaaacaattccactttcagttggtgtagcaag |
13271176 |
T |
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| Q |
112 |
atgcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttcaggtggcgatttcattttgtacccttctccacctcga |
211 |
Q |
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| T |
13271177 |
attcaattcaagatattcttcaatttgctgcttattaacacttccaacattatcacttctttcaggtggcgatttcattttgtactcttctccacctcga |
13271276 |
T |
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| Q |
212 |
cccatcttttgcgaagatcttgacttcacatcactgccatcaacatgtacaacagcagtgcctaaaatataaaggtttgagatgacatcataaattaata |
311 |
Q |
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| T |
13271277 |
cccgtcttttgcgaagatcttgacttcacatcactgccatcaacatgtccaacagcagtgcctaaaatataaaggtttgagatgacatcataaaataata |
13271376 |
T |
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| Q |
312 |
aaccaatttggaacaaaatcaactataggattgtttatgtcaaggtgtaaaagataacaagtaaaatgatgcgta |
386 |
Q |
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| T |
13271377 |
aaccaatttggaacaaaatcaactataggattgtttatgtcaaggtgtaaaagataacaagtaaaatcatgcgta |
13271451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 384 - 489
Target Start/End: Original strand, 13271546 - 13271651
Alignment:
| Q |
384 |
gtacattaaaaactgtggtaacattcatatacctggctcaaccatgtgatggatattaagatcagacatggcttcacttagttgacaagtagcttgaaat |
483 |
Q |
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| T |
13271546 |
gtacattacaaactgtggtaacattcatatacctgactcaaccatgtgatggatattaagatcagacatggcttcacttagttgacaagtagcttgaaat |
13271645 |
T |
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| Q |
484 |
tgattc |
489 |
Q |
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|||||| |
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| T |
13271646 |
tgattc |
13271651 |
T |
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