View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_high_9 (Length: 385)

Name: NF7241_high_9
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_high_9
NF7241_high_9
[»] chr8 (10 HSPs)
chr8 (2-197)||(4472192-4472387)
chr8 (216-369)||(4472050-4472203)
chr8 (5-147)||(39785590-39785733)
chr8 (71-118)||(5654673-5654720)
chr8 (17-148)||(10100686-10100817)
chr8 (46-168)||(6863078-6863201)
chr8 (42-132)||(34018199-34018289)
chr8 (53-138)||(11109573-11109658)
chr8 (48-138)||(11595556-11595648)
chr8 (71-168)||(34856453-34856550)
[»] chr5 (6 HSPs)
chr5 (5-168)||(33155527-33155691)
chr5 (48-147)||(2818988-2819087)
chr5 (78-138)||(3769833-3769893)
chr5 (71-166)||(31661002-31661097)
chr5 (49-104)||(1995141-1995196)
chr5 (26-104)||(6287199-6287278)
[»] chr7 (3 HSPs)
chr7 (74-168)||(7602824-7602917)
chr7 (49-167)||(26853081-26853199)
chr7 (71-167)||(46981316-46981410)
[»] chr3 (5 HSPs)
chr3 (72-167)||(35052531-35052626)
chr3 (46-148)||(40386335-40386436)
chr3 (53-149)||(42347356-42347452)
chr3 (33-105)||(2585907-2585980)
chr3 (49-127)||(7882811-7882889)
[»] chr6 (3 HSPs)
chr6 (6-132)||(2572263-2572391)
chr6 (13-95)||(2188701-2188784)
chr6 (3-103)||(957199-957299)
[»] chr1 (1 HSPs)
chr1 (42-105)||(39742558-39742621)
[»] chr4 (5 HSPs)
chr4 (54-147)||(34113677-34113770)
chr4 (6-102)||(43006666-43006763)
chr4 (42-118)||(6365226-6365302)
chr4 (32-147)||(8482358-8482474)
chr4 (13-104)||(26688726-26688817)
[»] chr2 (2 HSPs)
chr2 (50-107)||(19513993-19514050)
chr2 (48-104)||(43931734-43931790)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 4472387 - 4472192
Alignment:
Q  2 gtacacaagttagacaaatcttgcattacgcataaattagttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttatt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4472387 gtacacaagttagacaaatcttgcattacgcataaattagttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttatt 4472288  T
Q  102 gatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaagtatcaacttcaactcatatgagtgacatg 197  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4472287 gatccattagtgaaaaagacacttgtgcatgatgcaagaccattttgcatgtaaatgttaaacaaagtatcaacttcaactcatatgagtgacatg 4472192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 216 - 369
Target Start/End: Complemental strand, 4472203 - 4472050
Alignment:
Q  216 atgagtgtcatggggattaaagacttatctcctagagagttagagagtcatatctcttggagggttagggagttatctcccaaatgatgttttatatgac 315  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4472203 atgagtgacatggggattaaagacttatctcttagagagttagagagtcatatctctcggagggttagggagttatctctcaaatgatgttttatatgac 4472104  T
Q  316 agaataatgattattttggtgttttaaacctacttctcacctaattcttgatgt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4472103 agaataatgattattttggtgttttaaacctacttctcacctaattcttgatgt 4472050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 39785590 - 39785733
Alignment:
Q  5 cacaagttagacaaatcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattga 103  Q
    ||||||| |||||| |||||||| | ||||||  ||||||| |||||| ||||||||||||  ||| ||||||||||||||| |||||||||||| ||||    
T  39785590 cacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatgagaaatgatatgactttttga 39785689  T
Q  104 tccattagtgaaaaagacacttgtgcatgatgcaaaaccatttt 147  Q
     | | | | | ||| |||||||||||||||||||| ||||||||    
T  39785690 actaatggcgcaaaggacacttgtgcatgatgcaagaccatttt 39785733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 5654720 - 5654673
Alignment:
Q  71 ttaaattaaatgagatatgatatgacttattgatccattagtgaaaaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5654720 ttaaattaaatgagatatgatatgacttattgatccaatagtgaaaaa 5654673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 10100686 - 10100817
Alignment:
Q  17 aaatcttgcattacgcataaattagttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaa 116  Q
    ||||||||||||| |||||| ||||||||     | ||||||||||  ||||  || ||| ||||||||||| |||| |||||||||| || | ||||||    
T  10100686 aaatcttgcattatgcataagttagtttttattatggatcaataaactttactattcaatcaaatgagatataatataacttattgattcaattgtgaaa 10100785  T
Q  117 aagacacttgtgcatgatgcaaaaccattttg 148  Q
    |||| ||||| ||||||||||| |||||||||    
T  10100786 aagatacttgcgcatgatgcaagaccattttg 10100817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 6863078 - 6863201
Alignment:
Q  46 accattagatcaataaatcttacatttaaattaaatgagatatgatatgac-ttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccat 144  Q
    |||||| ||||||||||||| ||  ||||||||||||| ||||||| |||| || || ||| | | ||| ||||| |||||||||||| ||||| |||||    
T  6863078 accattggatcaataaatctcaccattaaattaaatgaaatatgatgtgactttttttatctaatggtggaaaaggcacttgtgcatggtgcaagaccat 6863177  T
Q  145 tttgcatgtaaatgttaaacaaag 168  Q
    ||||| |||  |||||| ||||||    
T  6863178 tttgcttgtgcatgttagacaaag 6863201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 34018289 - 34018199
Alignment:
Q  42 ttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatg 132  Q
    |||||||||| |||||||||||   ||  ||||||||||||||| ||||| |||||| |||||||  | |||||||||  |||||||||||    
T  34018289 ttttaccattggatcaataaattccaccattaaattaaatgagaaatgatttgactttttgatccgatggtgaaaaagttacttgtgcatg 34018199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 11109658 - 11109573
Alignment:
Q  53 gatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaa 138  Q
    |||||||||||  |||  |||||||||||| |||||||||||| | ||||||| | |||| |||| || | |||||||||||||||    
T  11109658 gatcaataaattctactattaaattaaatgggatatgatatgattgattgatcaaatagtaaaaaggatatttgtgcatgatgcaa 11109573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 11595648 - 11595556
Alignment:
Q  48 cattagatcaataaatcttaca--tttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaa 138  Q
    |||| |||||||||||  ||||  ||||||||||||| |||||||||||| | ||||||| | |||| |||| || | |||||||||||||||    
T  11595648 cattggatcaataaattctacacttttaaattaaatgggatatgatatgaatgattgatcaaatagtaaaaaggatatttgtgcatgatgcaa 11595556  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 34856453 - 34856550
Alignment:
Q  71 ttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaag 168  Q
    |||||||||| || |||||||  | ||| || ||||| |  ||||||||||||||||||||| ||||| || ||||||| |||  |||||| ||||||    
T  34856453 ttaaattaaaagaaatatgatgcggcttctttatccaattatgaaaaagacacttgtgcatggtgcaagactattttgcttgtgcatgttagacaaag 34856550  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 33155691 - 33155527
Alignment:
Q  5 cacaagttagacaaatcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattga 103  Q
    ||||||| |||||| |||||||| | ||| ||  ||||||| |||||| ||||||||||||  ||  ||||||||||||||| ||||| |||||| ||||    
T  33155691 cacaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatgagaaatgatttgactttttga 33155592  T
Q  104 tccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaag 168  Q
    |||  | ||||||||| |||||||||||| ||||  |||||||||| |||  |||||||||||||    
T  33155591 tccgatggtgaaaaagtcacttgtgcatggtgcaggaccattttgcttgtgcatgttaaacaaag 33155527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 2818988 - 2819087
Alignment:
Q  48 cattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccatttt 147  Q
    |||| ||||||||||||| ||  ||| ||||||||| |||||||   ||||||||||||| |||| ||||||||  ||||||||| ||||| ||||||||    
T  2818988 cattggatcaataaatctcaccattagattaaatgaaatatgatgcaacttattgatccaatagtaaaaaagacgtttgtgcatggtgcaagaccatttt 2819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 3769893 - 3769833
Alignment:
Q  78 aaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaa 138  Q
    ||||||||||||||||||||| |||||||| | |||||||  ||||||||||||| |||||    
T  3769893 aaatgagatatgatatgacttgttgatccaatggtgaaaagaacacttgtgcatggtgcaa 3769833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 31661097 - 31661002
Alignment:
Q  71 ttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaa 166  Q
    |||||||||||||||||| |||||| ||||||||||| |  ||||||||| ||||| | ||| | ||| ||||||||||  ||  |||||||||||    
T  31661097 ttaaattaaatgagatataatatgatttattgatccactgatgaaaaagatacttgcgtatggtacaagaccattttgctagtggatgttaaacaa 31661002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 1995141 - 1995196
Alignment:
Q  49 attagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgat 104  Q
    |||||||| |||||| ||||| |||||||| |||| ||||||||||| ||||||||    
T  1995141 attagatcgataaattttacaattaaattatatgaaatatgatatgatttattgat 1995196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 6287199 - 6287278
Alignment:
Q  26 attacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgat 104  Q
    |||| |||||| |||||||| | ||||| |||||||||| || |  ||||||||||||| ||||||||||| ||||||||    
T  6287199 attatgcataagttagttttcatcattaaatcaataaattttgccgttaaattaaatgatatatgatatgatttattgat 6287278  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 7602917 - 7602824
Alignment:
Q  74 aattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaag 168  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||| | |||  |||||| ||||||    
T  7602917 aattaaatgagatatgatgtga-ttattgatccaatagtgaaaaagacatttgtgcatggtgcaaaaccattttacttgtgcatgttagacaaag 7602824  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 26853199 - 26853081
Alignment:
Q  49 attagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttg 148  Q
    ||||||| ||||||||||||  ||||| ||||||| ||| ||| | ||||||| |||||   |||||||||||| || | |||||||||| ||||||||     
T  26853199 attagattaataaatcttaccattaaactaaatgatataagatgttacttattaatccaacggtgaaaaagacattttttcatgatgcaagaccatttta 26853100  T
Q  149 catgtaaatgttaaacaaa 167  Q
    | |||  ||||||||||||    
T  26853099 cttgtgcatgttaaacaaa 26853081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 46981410 - 46981316
Alignment:
Q  71 ttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaa 167  Q
    ||||||||| ||||| ||  |||||||| |||||||| | ||||||| | |||||||||||| ||||| ||||||| || |||  |||||| |||||    
T  46981410 ttaaattaattgagaaat--tatgactttttgatccaatggtgaaaacggcacttgtgcatggtgcaagaccatttagcttgtgcatgttagacaaa 46981316  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 35052531 - 35052626
Alignment:
Q  72 taaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgcatgtaaatgttaaacaaa 167  Q
    |||| ||||| | ||||||| |||||| |||||||| | ||| |||||||||||||||||||||||| | |||||||| |||  |||||| |||||    
T  35052531 taaaataaattaaatatgatgtgactttttgatccaatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaa 35052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 40386335 - 40386436
Alignment:
Q  46 accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccatt 145  Q
    |||||| ||||||||||||| ||  |||||||||||||   || || |||||| |||||||| | ||| |||||||||||||||||| ||||||||| ||    
T  40386335 accattggatcaataaatctcactattaaattaaatgaataattatgtgactt-ttgatccaatggtgcaaaagacacttgtgcatggtgcaaaaccttt 40386433  T
Q  146 ttg 148  Q
    |||    
T  40386434 ttg 40386436  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 42347356 - 42347452
Alignment:
Q  53 gatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccattttgc 149  Q
    ||||||||||||| |   |||||||| ||||||||||||  |||||||| ||||| | ||||||| ||||||| | |||| ||||| ||||||||||    
T  42347356 gatcaataaatctcatcattaaattatatgagatatgatgcgacttattaatccaatggtgaaaaggacacttattcatggtgcaagaccattttgc 42347452  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 2585980 - 2585907
Alignment:
Q  33 ataaattagtttta-ccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatc 105  Q
    ||||| |||||||| ||||||||| ||||||| | |   |||||||||||||||||| ||||||||||||||||    
T  2585980 ataaactagttttaaccattagataaataaatttcattgttaaattaaatgagatataatatgacttattgatc 2585907  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 7882889 - 7882811
Alignment:
Q  49 attagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgt 127  Q
    ||||||||||||||| |||   ||||||||||||||| ||||||| |||| | |||| | |||| |||| |||||||||    
T  7882889 attagatcaataaattttattattaaattaaatgagaaatgatataacttttggatctaatagtaaaaacgacacttgt 7882811  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 2572263 - 2572391
Alignment:
Q  6 acaagttagacaaatcttgcattacgcataaattagttttac-cattagatcaataaatcttacatttaaattaaatga-gatatgatatgacttattga 103  Q
    |||||| ||||||||||||||| | ||| || |||||||||  |||| || |||||||||| ||  |||||||| |||| ||| |||| |||||||||||    
T  2572263 acaagtaagacaaatcttgcatcatgcaaaatttagttttaaacattggaccaataaatctcacgattaaattatatgaagatgtgatgtgacttattga 2572362  T
Q  104 tccattagtgaaaaagacacttgtgcatg 132  Q
    || | | || ||||| |||||||||||||    
T  2572363 tctaatggtaaaaaaaacacttgtgcatg 2572391  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2188701 - 2188784
Alignment:
Q  13 agacaaatcttgcattacgcataaattagttt-taccattagatcaataaatcttacatttaaattaaatgagatatgatatga 95  Q
    ||||||||||||||| | | | ||  |||||| |||| || ||||||||||||||||| ||||||||||||| |||||||||||    
T  2188701 agacaaatcttgcatcatgtagaagctagtttctacctttggatcaataaatcttacaattaaattaaatgaaatatgatatga 2188784  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 957299 - 957199
Alignment:
Q  3 tacacaagttagacaaatcttgcattacgcataaattag-ttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttatt 101  Q
    ||||||||| ||||||||||||||||| | |||| |||| |||||| |||||||||| ||| || ||  ||||||| |||||||||| || | |||||||    
T  957299 tacacaagtgagacaaatcttgcattatgtataagttagtttttacaattagatcaa-aaacctcaccattaaatttaatgagatataatgtcacttatt 957201  T
Q  102 ga 103  Q
    ||    
T  957200 ga 957199  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 39742558 - 39742621
Alignment:
Q  42 ttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatc 105  Q
    ||||||| |||||||||||||||  ||  ||||||||||||| |||||| ||||||||||||||    
T  39742558 ttttacccttagatcaataaatcccaccattaaattaaatgaaatatgacatgacttattgatc 39742621  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Original strand, 34113677 - 34113770
Alignment:
Q  54 atcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgcatgatgcaaaaccatttt 147  Q
    |||||||||||| ||  ||||||||||||| ||||||| ||||||||||||| | |  |  ||| || ||||||||||||||||| || |||||    
T  34113677 atcaataaatctcactattaaattaaatgatatatgatgtgacttattgatcaaatgatataaatgatacttgtgcatgatgcaagacaatttt 34113770  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 43006666 - 43006763
Alignment:
Q  6 acaagttagacaaatcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattg 102  Q
    |||||| | |||| ||||||||||  || ||||| ||||| |||||| ||||||||||||||||| ||| || |||||| |||||||  |||||||||    
T  43006666 acaagtaaaacaagtcttgcattatacacaaattggttttcaccatttgatcaataaatcttacaattagatcaaatgaaatatgatgcgacttattg 43006763  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 6365226 - 6365302
Alignment:
Q  42 ttttaccattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaa 118  Q
    ||||| |||| ||||||||||| | ||  ||||||||||| |||||| ||||||| |||||||| ||| || |||||    
T  6365226 ttttatcattggatcaataaatttcactattaaattaaataagatataatatgacatattgatctattggtaaaaaa 6365302  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 8482358 - 8482474
Alignment:
Q  32 cataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatccattagtgaaaaagacacttgtgca 130  Q
    |||||| ||||||| |||||| | ||||||||| | ||  ||||||||||||| |||||| ||||||| |||||| | | ||| |  |||| ||||||||    
T  8482358 cataaactagttttcaccattggttcaataaatttcaccattaaattaaatgaaatatgacatgactttttgatctaatggtggatcagacgcttgtgca 8482457  T
Q  131 tgatgcaaaaccatttt 147  Q
    |  ||||| ||||||||    
T  8482458 tagtgcaagaccatttt 8482474  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 26688817 - 26688726
Alignment:
Q  13 agacaaatcttgcattacgcataaattagtttt-accattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgat 104  Q
    ||||||||||||||| | || |||||||||||| | |||| ||||||||| ||   |||| |||||||||||||||| |||||  ||||||||    
T  26688817 agacaaatcttgcatcatgcctaaattagttttcatcatttgatcaataactccaccatt-aaattaaatgagatatcatatggtttattgat 26688726  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 19513993 - 19514050
Alignment:
Q  50 ttagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgatcca 107  Q
    |||||||||||||||| |   ||||||||||||| |||| |||||||||||| |||||    
T  19513993 ttagatcaataaatctcatcattaaattaaatgaaatataatatgacttatttatcca 19514050  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 43931790 - 43931734
Alignment:
Q  48 cattagatcaataaatcttacatttaaattaaatgagatatgatatgacttattgat 104  Q
    |||||||| ||||||||| ||  |||||| |||||| ||||||| ||||||||||||    
T  43931790 cattagatgaataaatctcaccattaaatcaaatgatatatgatgtgacttattgat 43931734  T

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