View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_low_1 (Length: 1740)

Name: NF7241_low_1
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_low_1
NF7241_low_1
[»] chr2 (31 HSPs)
chr2 (688-1726)||(8403626-8404665)
chr2 (195-627)||(8404726-8405157)
chr2 (1531-1721)||(8429486-8429676)
chr2 (918-1062)||(8439445-8439589)
chr2 (907-1046)||(8406244-8406383)
chr2 (918-1028)||(8375514-8375624)
chr2 (1615-1719)||(8376193-8376297)
chr2 (1496-1575)||(8368104-8368183)
chr2 (907-1046)||(8395189-8395328)
chr2 (1496-1575)||(8401227-8401306)
chr2 (1496-1575)||(8422804-8422883)
chr2 (1507-1561)||(8411867-8411921)
chr2 (1507-1561)||(8433965-8434019)
chr2 (907-1028)||(8412382-8412503)
chr2 (907-1020)||(8431418-8431531)
chr2 (907-1028)||(8434480-8434601)
chr2 (768-864)||(8368812-8368908)
chr2 (1509-1561)||(8376087-8376139)
chr2 (1615-1719)||(8395879-8395983)
chr2 (768-864)||(8400502-8400598)
chr2 (1615-1719)||(8405589-8405693)
chr2 (768-864)||(8422079-8422175)
chr2 (1509-1561)||(8431018-8431070)
chr2 (1615-1690)||(8430889-8430964)
chr2 (1493-1552)||(8459649-8459708)
chr2 (918-996)||(8417629-8417707)
chr2 (1508-1557)||(8416952-8417001)
chr2 (1615-1719)||(8411709-8411813)
chr2 (1615-1719)||(8433807-8433911)
chr2 (1615-1690)||(8416822-8416897)
chr2 (1511-1561)||(8405747-8405797)
[»] chr4 (4 HSPs)
chr4 (1516-1689)||(55335978-55336151)
chr4 (1515-1719)||(55330516-55330720)
chr4 (1-35)||(52997252-52997286)
chr4 (944-1057)||(55331169-55331282)
[»] scaffold1738 (1 HSPs)
scaffold1738 (1615-1719)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 891; Significance: 0; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 891; E-Value: 0
Query Start/End: Original strand, 688 - 1726
Target Start/End: Complemental strand, 8404665 - 8403626
Alignment:
Q  688 gatcatggtgattatgatgaaagtatatataattcttcaaaatttaatattactactataaaactct--gcgatttcggaggctgtatcagacagaattg 785  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  8404665 gatcatggtgattatgatgaaagtatatataattcttcaaattttaatattactactataaaactctatgcaatttcggaggctgtatcagacagaattg 8404566  T
Q  786 aaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcacagcttcaacaatatctgctat 885  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8404565 aaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcacagcttcaacaatgtctgctat 8404466  T
Q  886 tgcatgttgttttgattctgatgcaccccttctggctttgaaactatcttct--gctatgttattttctgcagccactggaatattacttgtgatgaaca 983  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  8404465 tgcatgttgttttgattctgatgcaccccttctggctttgaaactatcttctctgctatgttattttctgccgccactggaatattacttgtgatgaaca 8404366  T
Q  984 aaatccaaccttcacaacttgcagaagaacaaaggaacgctacaaaactctttaaacaacttcgtaggcaaatccaaaccaaactatcacttggtaataa 1083  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8404365 aaatccaaccttcacaacttgcagaagaacaaaggaacgctacaaaactctttaaacaacttcgtagacaaatccaaaccaaactatcacttggtaataa 8404266  T
Q  1084 taatcacagtgaagatgatgtgagggatgcaattgagaaggttttggctcttgataaagcctatccacttcctttgttaggaggtgcaatgattgcgaaa 1183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  8404265 taatcacagtgaagatgatgtgagggatgcaattgagaaggttttggctcttgataaagcctatccacttcctttattaggaggtgcaatgattgagaaa 8404166  T
Q  1184 tttccttccaaatttgaagcatctaggtggtggccatgtccaaagaaaattactggattgaacaataagatggagattaataatgagagcaataatgggt 1283  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||| ||| ||||| ||||||||||||||||   ||| | |||||||| |    
T  8404165 tttccatccaaatttgaagcatctatgtggtggccatgtcaaaagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggat 8404069  T
Q  1284 ggaatttggaattggaagatgaaatgaatgaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagat 1383  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8404068 ggaatttggagttggaaaatgaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagat 8403969  T
Q  1384 taacaagggtttagcaatttttggacctttgttaacaggaattgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgct 1483  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8403968 taacaagagtttagcaattttaggacctttgttaacaggaattgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgct 8403869  T
Q  1484 ttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagc 1583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403868 ttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagc 8403769  T
Q  1584 ttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaag 1683  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8403768 ttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaag 8403669  T
Q  1684 aagtgtaatggagatgagagagcttgcctcaaaatctgatgtc 1726  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  8403668 aagtgtaatgcagatgagagagcttgcctcaaaatctgatgtc 8403626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 195 - 627
Target Start/End: Complemental strand, 8405157 - 8404726
Alignment:
Q  195 gaaaagaatattatactgtatttttatttaactcaaccatattatttagcatgatggtgattgcattaattacatggcttcaatattttgaagaggaatg 294  Q
    ||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||| |||||    ||||||||||||||||||||||||||||    
T  8405157 gaaaagaatattatactgtatttttatctaactcaa---tattatttagcatgatggtgattccatta----catggcttcaatattttgaagaggaatg 8405065  T
Q  295 gggtcaagattatgacataagcaaatatgtcaagggtaaactggacccc-acatgttaatgtttccg-atccagcaccttcttttctagttagtta---- 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||        
T  8405064 gggtcaagattatgacataagcaaatatgtcaagggtaaactggacccccacatgttaatgtttccgtatccagcaccttcttttctagttagttaatta 8404965  T
Q  389 tttgtataaatatatacatatactaaaatcttcaatcaaaaggctaaacacaaaatatttgcaacatgcattcatcacaatcttcatcaccacttaactg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  8404964 tttgtataaatatatacatatactaaaatcttcaatcaaaaggctaaacacaaaatatttgcaacatgcattcattaaaattttcatcaccacttaactg 8404865  T
Q  489 tttaccttcatctaannnnnnnnnnnnnnnnnnncatctatcgttgaatagaatcacatgctgtatcaatttcccaaaaccaccaagactttgtttattt 588  Q
    |||||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8404864 tttaccttcatctaattcttcttcttcttcatctcatctatcgttgaatagaatcacatgctgtatcaatttcccaaaactaccaagactttgtttattt 8404765  T
Q  589 tctgttccaaaagcatccaagacaagtgtggtaattaag 627  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  8404764 tctgttccaaaagcatctaagacaagtgtggtaattaag 8404726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 8e-65
Query Start/End: Original strand, 1531 - 1721
Target Start/End: Complemental strand, 8429676 - 8429486
Alignment:
Q  1531 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat 1630  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  1631 aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctg 1721  Q
    ||||||||||| || || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||  ||||||| |||||||    
T  8429576 aaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctg 8429486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 918 - 1062
Target Start/End: Complemental strand, 8439589 - 8439445
Alignment:
Q  918 tggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgcagaagaacaaag 1017  Q
    ||||||||||  ||||||||||| | ||||| ||||||||||||||| | || ||| | |||||||||||||||||||| ||| | || || ||||||||    
T  8439589 tggctttgaagttatcttctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaag 8439490  T
Q  1018 gaacgctacaaaactctttaaacaacttcgtaggcaaatccaaac 1062  Q
     || ||||||| | | || || |||||||  || |||||||||||    
T  8439489 aaatgctacaagattgttcaagcaacttcaaagtcaaatccaaac 8439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 907 - 1046
Target Start/End: Complemental strand, 8406383 - 8406244
Alignment:
Q  907 tgcaccccttctggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgca 1006  Q
    |||||| ||| ||||| ||||||| || |||||| | ||||| ||||| ||||||||| |||| ||| | ||||||||||||||||| || |||||  ||    
T  8406383 tgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcaca 8406284  T
Q  1007 gaagaacaaaggaacgctacaaaactctttaaacaacttc 1046  Q
    || |||||||| || ||||||| | | || ||||||||||    
T  8406283 gaggaacaaagaaatgctacaagattgttcaaacaacttc 8406244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 918 - 1028
Target Start/End: Original strand, 8375514 - 8375624
Alignment:
Q  918 tggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgcagaagaacaaag 1017  Q
    ||||||||||  ||||||||||| | ||||| ||||||||||||||| | || ||| | |||||||||||||||||||| ||| | || || ||||||||    
T  8375514 tggctttgaagttatcttctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaag 8375613  T
Q  1018 gaacgctacaa 1028  Q
     || |||||||    
T  8375614 aaatgctacaa 8375624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || |||||||||    
T  8376193 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca 8376292  T
Q  1715 aaatc 1719  Q
    |||||    
T  8376293 aaatc 8376297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1496 - 1575
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  1496 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 1575  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 907 - 1046
Target Start/End: Original strand, 8395189 - 8395328
Alignment:
Q  907 tgcaccccttctggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgca 1006  Q
    |||||| ||| ||||| ||||||| || |||||| | ||||| ||||| ||||||||| ||||  || | ||||||||||||||||| || |||||  ||    
T  8395189 tgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgattatcatgaacaaaatccaaccctctcaactcaca 8395288  T
Q  1007 gaagaacaaaggaacgctacaaaactctttaaacaacttc 1046  Q
    || |||||||| || ||||||| | | || ||||||||||    
T  8395289 gaggaacaaagaaatgctacaagattgttcaaacaacttc 8395328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1496 - 1575
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  1496 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 1575  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 1496 - 1575
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  1496 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 1575  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1507 - 1561
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  1507 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 1561  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1507 - 1561
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  1507 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 1561  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 907 - 1028
Target Start/End: Complemental strand, 8412503 - 8412382
Alignment:
Q  907 tgcaccccttctggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgca 1006  Q
    |||||| ||| ||||| ||||||| || |||||| | ||||| ||||| ||||||||| ||||  || | ||||||||||||||||| || |||||  ||    
T  8412503 tgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatccaaccctctcaactcaca 8412404  T
Q  1007 gaagaacaaaggaacgctacaa 1028  Q
    || |||||||| || |||||||    
T  8412403 gaggaacaaagaaatgctacaa 8412382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 907 - 1020
Target Start/End: Complemental strand, 8431531 - 8431418
Alignment:
Q  907 tgcaccccttctggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgca 1006  Q
    |||||| ||| ||||| ||||||||||||||||| |  | ||||| |||||||  ||| | || ||| | ||||||||||||||||| || |||||  ||    
T  8431531 tgcaccacttttggctctgaaactatcttctgctctcctgttttcggcagccaacggattgttgcttatcatgaacaaaatccaaccctctcaactcaca 8431432  T
Q  1007 gaagaacaaaggaa 1020  Q
    ||||||||||||||    
T  8431431 gaagaacaaaggaa 8431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 907 - 1028
Target Start/End: Complemental strand, 8434601 - 8434480
Alignment:
Q  907 tgcaccccttctggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgca 1006  Q
    |||||| ||| ||||| ||||||| || |||||| | ||||| ||||| ||||||||| ||||  || | ||||||||||||||||| || |||||  ||    
T  8434601 tgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaaatccaaccctctcaactcaca 8434502  T
Q  1007 gaagaacaaaggaacgctacaa 1028  Q
    || |||||||| || |||||||    
T  8434501 gaggaacaaagaaatgctacaa 8434480  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 768 - 864
Target Start/End: Complemental strand, 8368908 - 8368812
Alignment:
Q  768 ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac 864  Q
    ||||||| |||||||| ||||||||| ||||| | ||  | ||||| || |||||||| || ||| |||||||||||||||||||||| || |||||    
T  8368908 ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac 8368812  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1509 - 1561
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  1509 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 1561  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8395879 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 8395978  T
Q  1715 aaatc 1719  Q
    |||||    
T  8395979 aaatc 8395983  T

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Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 768 - 864
Target Start/End: Original strand, 8400502 - 8400598
Alignment:
Q  768 ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac 864  Q
    ||||||| |||||||| ||||||||| ||||| | ||  | ||||| || |||||||| || ||| |||||||||||||||||||||| || |||||    
T  8400502 ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac 8400598  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8405693 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca 8405594  T
Q  1715 aaatc 1719  Q
    |||||    
T  8405593 aaatc 8405589  T

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Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 768 - 864
Target Start/End: Original strand, 8422079 - 8422175
Alignment:
Q  768 ctgtatcagacagaattgaaatgcataaaaacttaggacagcaacgtgacaattggaacacgcttttattaaactccatcaacatgataacactcac 864  Q
    ||||||| |||||||| ||||||||| ||||| | ||  | ||||| || |||||||| || ||| |||||||||||||||||||||| || |||||    
T  8422079 ctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactccatcaacatgatcactctcac 8422175  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1509 - 1561
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  1509 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 1561  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

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Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1615 - 1690
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 1690  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| |||||||    
T  8430964 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta 8430889  T

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Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1493 - 1552
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  1493 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 1552  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

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Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 918 - 996
Target Start/End: Complemental strand, 8417707 - 8417629
Alignment:
Q  918 tggctttgaaactatcttctgctatgttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttc 996  Q
    ||||||||||  ||||||||||| | || |||||||||||||| ||| | || ||| | ||||||||||||||||||||    
T  8417707 tggctttgaagttatcttctgctcttttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttc 8417629  T

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Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1508 - 1557
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  1508 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 1557  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8411813 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8411714  T
Q  1715 aaatc 1719  Q
    |||||    
T  8411713 aaatc 8411709  T

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Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8433911 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8433812  T
Q  1715 aaatc 1719  Q
    |||||    
T  8433811 aaatc 8433807  T

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Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1615 - 1690
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 1690  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| ||||    
T  8416897 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta 8416822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1511 - 1561
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  1511 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 1561  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr4 (Bit Score: 66; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1516 - 1689
Target Start/End: Complemental strand, 55336151 - 55335978
Alignment:
Q  1516 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa 1615  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  1616 gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt 1689  Q
    |||||||||||| | |||||||||||||||||| | ||||| ||||| || ||||||   || |||||||||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt 55335978  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-23
Query Start/End: Original strand, 1515 - 1719
Target Start/End: Complemental strand, 55330720 - 55330516
Alignment:
Q  1515 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga 1614  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||  ||||  | ||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 55330621  T
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |  ||||||||||| ||| | ||||| ||||| || || |||   |||||||||| |||    ||||||||||||||||| |||    
T  55330620 agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttca 55330521  T
Q  1715 aaatc 1719  Q
    |||||    
T  55330520 aaatc 55330516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52997286 - 52997252
Alignment:
Q  1 tgaaaatgaataaaaacctttttaacatgataaac 35  Q
    |||||||||||||||||||||||||||||||||||    
T  52997286 tgaaaatgaataaaaacctttttaacatgataaac 52997252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 944 - 1057
Target Start/End: Complemental strand, 55331282 - 55331169
Alignment:
Q  944 ttattttctgcagccactggaatattacttgtgatgaacaaaatccaaccttcacaacttgcagaagaacaaaggaacgctacaaaactctttaaacaac 1043  Q
    |||||||||||||| ||  | ||| | ||| | ||||||||||| || ||||| ||||| || ||||||||||| |||||||||| | | || ||||| |    
T  55331282 ttattttctgcagctacaagtatacttcttattatgaacaaaattcagccttcgcaactcgcggaagaacaaagaaacgctacaagattattcaaacatc 55331183  T
Q  1044 ttcgtaggcaaatc 1057  Q
    |||| || ||||||    
T  55331182 ttcgaagccaaatc 55331169  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1615 - 1719
Target Start/End: Original strand, 25 - 129
Alignment:
Q  1615 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 1714  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  25 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 124  T
Q  1715 aaatc 1719  Q
    |||||    
T  125 aaatc 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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