View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_low_11 (Length: 454)
Name: NF7241_low_11
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 34671068 - 34671500
Alignment:
| Q |
18 |
tttattctaactctaccatcgtagttggtttgaataaagcaaattatannnnnnnattacataataccatatagcaatgtcttcnnnnnnnnataattaa |
117 |
Q |
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| T |
34671068 |
tttattctaactctaccatcgtagttggtttgaataaagcaaattatatttttttattacagaataccatatagcaatgtctttttttttttaaaattaa |
34671167 |
T |
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| Q |
118 |
attagcccaccgaaattaatatcggagacaaccaaatcagagactttaattaagaggaacccactcaaagaggaacttactccaagatcttaaaccaaca |
217 |
Q |
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| T |
34671168 |
attagcccatcaaaattaatatcggagacaatcaaatcagagactttaattaagaggaatccacttaaagaggaacttactccaagatcttaaaccaaca |
34671267 |
T |
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| Q |
218 |
ccatcaaactaattcaaatggattatcataaagatacttaatagggaattttattcaaagacatctaatctcttttcaaataaccctctaaagcaccaaa |
317 |
Q |
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| T |
34671268 |
ccaccaaactaattcaaatggattatcataaagaaacttaatagggaattttattcaaagatatctaatctcttttcaaataaccctctagagcaccaaa |
34671367 |
T |
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| Q |
318 |
atgcgcgagatgcttgtaaagaaaactgcgacacactatttcaaatcctaaccaatttgctaccaaagatcataacccgcc--nnnnnnnttgcaactga |
415 |
Q |
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| T |
34671368 |
atgcgcgagatgcttgtaaagaaaactgtgacacactatttcaaatcctaaccaatttgctaccaaagatcataacccgccaaaaaaaaattgcatccga |
34671467 |
T |
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| Q |
416 |
caattaagtgatctctatcttgattcatctcac |
448 |
Q |
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| T |
34671468 |
caattaagtgatatctatcttgattcatatcac |
34671500 |
T |
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