View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7241_low_13 (Length: 387)

Name: NF7241_low_13
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7241_low_13
NF7241_low_13
[»] scaffold1312 (1 HSPs)
scaffold1312 (14-387)||(853-1220)
[»] chr6 (5 HSPs)
chr6 (14-387)||(10630850-10631211)
chr6 (15-207)||(26595708-26595901)
chr6 (131-213)||(1600707-1600789)
chr6 (36-252)||(18089708-18089925)
chr6 (129-186)||(24360067-24360124)
[»] chr3 (11 HSPs)
chr3 (120-256)||(10974694-10974831)
chr3 (88-211)||(37836473-37836594)
chr3 (129-282)||(12744381-12744535)
chr3 (128-200)||(14249054-14249127)
chr3 (129-262)||(36098028-36098160)
chr3 (137-230)||(6437797-6437891)
chr3 (129-213)||(50330980-50331063)
chr3 (137-218)||(9263720-9263802)
chr3 (89-158)||(20784088-20784157)
chr3 (89-158)||(38353462-38353531)
chr3 (84-140)||(50244559-50244614)
[»] scaffold0021 (1 HSPs)
scaffold0021 (131-256)||(127325-127451)
[»] chr8 (10 HSPs)
chr8 (32-255)||(759573-759797)
chr8 (129-266)||(21586874-21587012)
chr8 (131-261)||(10899867-10899994)
chr8 (129-213)||(13757575-13757659)
chr8 (129-213)||(23140772-23140856)
chr8 (129-197)||(37364342-37364410)
chr8 (128-235)||(10901177-10901283)
chr8 (109-254)||(14376371-14376517)
chr8 (131-232)||(38292013-38292114)
chr8 (25-69)||(21585548-21585592)
[»] scaffold0169 (1 HSPs)
scaffold0169 (36-218)||(3372-3555)
[»] scaffold0036 (1 HSPs)
scaffold0036 (131-255)||(48544-48669)
[»] chr4 (11 HSPs)
chr4 (129-253)||(13668033-13668157)
chr4 (129-253)||(13680890-13681014)
chr4 (128-237)||(22192875-22192985)
chr4 (129-266)||(283850-283987)
chr4 (129-282)||(39976763-39976920)
chr4 (129-282)||(13231002-13231155)
chr4 (84-140)||(315290-315345)
chr4 (84-140)||(6555504-6555559)
chr4 (136-180)||(42756609-42756653)
chr4 (31-102)||(13239916-13239987)
chr4 (89-158)||(14253249-14253318)
[»] chr5 (2 HSPs)
chr5 (129-266)||(33011922-33012060)
chr5 (84-140)||(9025922-9025977)
[»] scaffold0191 (1 HSPs)
scaffold0191 (128-218)||(11804-11895)
[»] chr7 (2 HSPs)
chr7 (289-387)||(26374940-26375039)
chr7 (135-201)||(2929666-2929733)
[»] scaffold1315 (1 HSPs)
scaffold1315 (134-183)||(1505-1554)
[»] scaffold1293 (1 HSPs)
scaffold1293 (134-183)||(517-566)
[»] chr2 (7 HSPs)
chr2 (129-213)||(41753143-41753227)
chr2 (84-140)||(31964908-31964963)
chr2 (137-218)||(14873672-14873754)
chr2 (128-201)||(45055356-45055429)
chr2 (129-186)||(20443666-20443723)
chr2 (135-242)||(36727376-36727485)
chr2 (23-72)||(38796926-38796975)
[»] scaffold0061 (1 HSPs)
scaffold0061 (89-158)||(44741-44810)
[»] scaffold0017 (1 HSPs)
scaffold0017 (89-158)||(153977-154046)
[»] chr1 (2 HSPs)
chr1 (31-102)||(27342344-27342415)
chr1 (136-189)||(49879361-49879414)


Alignment Details
Target: scaffold1312 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 853 - 1220
Alignment:
Q  14 atcaatcataattgtgtggtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  853 atcaatcataattgtgtggtttctcttagcctaatgtgatggttcaccccattgtagactccctcagtactctcaacattacgatgaacggtttagttag 952  T
Q  114 ttttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  953 ttttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 1052  T
Q  214 ccttctcctttggtctttggtggattttaaccatagaaaaacactaatgtgttgggctgagttaacaaattacgggcttagaaaattctttaaatgttgt 313  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  |||||| ||||||||||||||||||    
T  1053 cattctcctttggtctttggtggattttaaccatagaaaaacactaatgtgttgtgcggagttaacaaattacttgcttagtaaattctttaaatgttgt 1152  T
Q  314 tgcgttttttaaccgaatctaactttatggtaattaattacacaaaaatctacaactcattcaacaatttcata 387  Q
    || | ||||||||||||||||||||| |||     |||||||||||||||| |||||||||||| |||||||||    
T  1153 tgtg-tttttaaccgaatctaactttttgg-----aattacacaaaaatctccaactcattcaaaaatttcata 1220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 10631211 - 10630850
Alignment:
Q  14 atcaatcataattgtgtggtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttag 113  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  10631211 atcaatcataattgtgtggtttctcttagactaatgtgatggtccaactcattgtagactccctcagtactctcaacattacgatgaacggtttagttag 10631112  T
Q  114 ttttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||| ||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  10631111 ttttgggatgtaaatt--------tttaaattaaatttatgtttttgggtgttgttcactttcatgcaatatatttaatgaatctctaatatattaaatt 10631020  T
Q  214 ccttctcctttggtctttggtggattttaaccatagaaaaacactaatgtgttgggctgagttaacaaattacgggcttagaaaattctttaaatgttgt 313  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||   | ||||||||||||||||| | || | |||||||   ||||||||    
T  10631019 ccttctcctttggtctttagtggattttaaccatagaaaaacagtaatgtgtcatgttgagttaacaaattacgtgtttggtaaattct---aatgttgt 10630923  T
Q  314 tgcgttttttaaccgaatctaactttatggt-aattaattacacaaaaatctacaactcattcaacaatttcata 387  Q
    || ||||||||| ||||| ||||||| |||| || |||||||||||| |||   |||| ||||||||||||||||    
T  10630922 tgtgttttttaatcgaatttaactttttggtaaactaattacacaaatatc--aaacttattcaacaatttcata 10630850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 26595901 - 26595708
Alignment:
Q  15 tcaatcataattgtgtggtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttagt 114  Q
    ||||||||||||||||||||| || ||||||||||| ||| ||||||||||| |||||||||||   ||||  || |||| ||||||| ||||  |||||    
T  26595901 tcaatcataattgtgtggtttttcctagcctaatgtcatgatccaacccattttagactccctcataactcggaatattaagatgaactgtttcattagt 26595802  T
Q  115 tttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat-ttttaatcaatctctaatatat 207  Q
    |||  ||||| |||||||| |||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||| ||||||||||||||    
T  26595801 tttaggatgtcaattgtttgatttttatattaaatttaagtatttggttgttgttcgctttcatgcaatattttttaattaatctctaatatat 26595708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 1600707 - 1600789
Alignment:
Q  131 tttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||  ||||||| | ||||||  |||| |||||| ||||||||||||| ||| ||| |||||||    
T  1600707 tttaatttttatattaaatttaaatttttggcttttgttcgttttcctgcaatttttttaatcaatccctattattttaaatt 1600789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 252
Target Start/End: Complemental strand, 18089925 - 18089708
Alignment:
Q  36 ctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaa 135  Q
    ||||||| ||||| ||||| ||||||| |||||| |||||||  | |||    |||||| ||||||| ||||  || ||||||||| || | ||||| ||    
T  18089925 ctcttagtctaatatgatgatccaacctattgtatactcccttagaactacggacattatgatgaactgttttctttgttttgagaagtcatttgttcaa 18089826  T
Q  136 tttttatattaaatttatgtttttgggtgttgttcactttcatgcaata--tttttaatcaatctctaatatattaaattccttctcctttggtctttgg 233  Q
    ||||||||||||||||| | |||||| | |||||  |||||  ||||||  |||||| |||||||||| ||| | || ||||| | |||| ||| ||  |    
T  18089825 tttttatattaaatttaag-ttttggatattgtttgctttctagcaatatttttttactcaatctctattatttcaatttcctccaccttcggtattcag 18089727  T
Q  234 tggattttaaccatagaaa 252  Q
    |||  ||||||||||||||    
T  18089726 tgggatttaaccatagaaa 18089708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 24360124 - 24360067
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatt 186  Q
    ||||||| |||||||||||||||  | |||||| ||| |||| |||||||||||||||    
T  24360124 tgtttaagttttatattaaattttaggttttggatgtcgttcgctttcatgcaatatt 24360067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 10974831 - 10974694
Alignment:
Q  120 gatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat-ttttaatcaatctctaatatattaaattccttc 218  Q
    ||||| ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| | ||| ||||    
T  10974831 gatgtcaattgtttaatttttatattaaatttaagtttttggttgttgttcgctttcatgcaatattttttaatcaatctctaacatatcatatttcttc 10974732  T
Q  219 tcctttggtctttggtggattttaaccatagaaaaaca 256  Q
     ||||| |||||||||||| ||||||||||||||||||    
T  10974731 acctttagtctttggtggaatttaaccatagaaaaaca 10974694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 37836594 - 37836473
Alignment:
Q  88 aacattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatattt 187  Q
    ||||||| ||||||  |||| |||||||||  ||||| | |||||| |||||||||||||||||| |||||||| ||| |||||||||| |  ||| |||    
T  37836594 aacattatgatgaattgttttgttagtttttggatgtcatttgtttcatttttatattaaatttaagtttttggatgtcgttcactttctt--aattttt 37836497  T
Q  188 ttaatcaatctctaatatattaaa 211  Q
    ||||||||| |||| ||| |||||    
T  37836496 ttaatcaatttctattattttaaa 37836473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 282
Target Start/End: Complemental strand, 12744535 - 12744381
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatattt-ttaatcaatctctaatatattaaattccttctcctttggt 227  Q
    ||||||||||||||||| ||||||  ||||| | |||||||| ||| |||| | | ||| || |||||||  || ||| ||||||| |||| ||||| ||    
T  12744535 tgtttaatttttatattgaatttaaattttttgttgttgttcgcttccatgtattttttatttatcaatccttattattttaaatttcttcaccttttgt 12744436  T
Q  228 ctttggtggattttaaccatagaaaaacactaatgtgttgggctgagttaacaaa 282  Q
    ||||||||   ||||||||||||||||| ||| ||||||  ||||| ||||||||    
T  12744435 ctttggtgagatttaaccatagaaaaactctattgtgttatgctgaattaacaaa 12744381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 14249127 - 14249054
Alignment:
Q  128 ttgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctct 200  Q
    |||| ||||||||| |||||||| | |||||| | |||||||| ||||||||||||||||| ||||||||||||    
T  14249127 ttgtataatttttaaattaaattgaagttttttgatgttgttcgctttcatgcaatattttataatcaatctct 14249054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 262
Target Start/End: Original strand, 36098028 - 36098160
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaata-tttttaatcaatctctaatatattaaattccttctcctttggt 227  Q
    ||||||||||||||||| ||||||  |||||   | |||||||||| |||| | |  ||||| ||||||| ||| ||| ||||||| |||| ||||| ||    
T  36098028 tgtttaatttttatattgaatttaattttttt--ttttgttcacttccatgtatttgttttttatcaatccctattattttaaatttcttcaccttttgt 36098125  T
Q  228 ctttggtggattttaaccatagaaaaacactaatg 262  Q
    ||||||||   ||||||||||||||||| ||||||    
T  36098126 ctttggtgagatttaaccatagaaaaactctaatg 36098160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 6437797 - 6437891
Alignment:
Q  137 ttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctctaatatattaaattccttctcctttggtctt 230  Q
    ||||||||||| || | |||||| | |||| ||| ||||||||||||||||| ||||||||||||| ||| | || ||||||| | |||||||||    
T  6437797 ttttatattaagttgaagttttttgatgtttttcgctttcatgcaatattttataatcaatctctattatttcaacttccttcacttttggtctt 6437891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 50331063 - 50330980
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  |||| ||| ||  |||||||||||| ||| ||| |||||||    
T  50331063 tgtttaatttttatattaaatttaaatttttggctgttgttcgttttcctgccat-cttttaatcaatccctattattttaaatt 50330980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 9263720 - 9263802
Alignment:
Q  137 ttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctctaatatattaaattccttc 218  Q
    ||||||||||| || | |||||| | |||| ||| ||||||||||||||||| ||||||||||||| ||| | || |||||||    
T  9263720 ttttatattaagttgaagttttttgatgtttttcgctttcatgcaatattttataatcaatctctattatttcaacttccttc 9263802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 20784088 - 20784157
Alignment:
Q  89 acattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttt 158  Q
    |||||| ||||||| |||| ||| ||||| ||| || | ||||| ||||||||||||||||||| |||||    
T  20784088 acattatgatgaactgttttgtttgtttttagaagtcatttgttcaatttttatattaaatttaagtttt 20784157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 38353531 - 38353462
Alignment:
Q  89 acattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttt 158  Q
    |||||| ||||||| |||| ||| ||||| ||| || | ||||| ||||||||||||||||||| |||||    
T  38353531 acattatgatgaactgttttgtttgtttttagaagtcatttgttcaatttttatattaaatttaagtttt 38353462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 50244559 - 50244614
Alignment:
Q  84 tcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaattttt 140  Q
    |||||| |||||||||||| |||| ||||||||| |||||| | |||||||||||||    
T  50244559 tcacaatattacgatgaactgttttgttagtttt-agatgtcatttgtttaattttt 50244614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 127451 - 127325
Alignment:
Q  131 tttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat-ttttaatcaatctctaatatattaaattccttctcctttggtct 229  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||| ||||||| |||| ||||| |||| ||||| ||||    
T  127451 tttaatttttatattaaatttaagtttttggttgttgttcgctttcatgcaatattttttaatcattctctaacatatcaaatttcttcgcctttagtct 127352  T
Q  230 ttggtggattttaaccatagaaaaaca 256  Q
    |||||||| |||||||| |||||||||    
T  127351 ttggtggaatttaaccagagaaaaaca 127325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 255
Target Start/End: Original strand, 759573 - 759797
Alignment:
Q  32 gtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttagttttgagatgtaaattgt 131  Q
    ||||||||||  ||||||||||||| ||||| ||||||| | | ||  | ||||  ||||||| ||||||| |||| ||||||||| | |||| | ||||    
T  759573 gtttctcttaagctaatgtgatggttcaacctattgtaggcgctcttagaactctaaacattatgatgaactgttttgttagtttttatatgtcatttgt 759672  T
Q  132 ttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaata-tttttaatcaatctctaatatattaaattccttctcctttggtctt 230  Q
    ||||||||||||||||||||| |||||||| ||||||||| | |||| ||||| |||||||||||||| || ||| | ||||||||||   |||||| ||    
T  759673 ttaatttttatattaaatttaagtttttggatgttgttcaatatcatacaatattttttaatcaatctatactatttcaaattccttcatttttggtttt 759772  T
Q  231 tggtggattttaaccatagaaaaac 255  Q
    ||||||   |||| |||||||||||    
T  759773 tggtgggagttaaacatagaaaaac 759797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 21587012 - 21586874
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatattttta-atcaatctctaatatattaaattccttctcctttggt 227  Q
    ||||||||||||||||| ||||||  ||||| | |||||||||||| |||| ||| |||||  ||||||| ||| ||| ||||||| |||| |||||  |    
T  21587012 tgtttaatttttatattgaatttaaattttttgttgttgttcacttccatgtaatttttttttatcaatccctattattttaaatttcttcaccttttat 21586913  T
Q  228 ctttggtggattttaaccatagaaaaacactaatgtgtt 266  Q
    ||||||||   ||||||||||||||||| ||||||||||    
T  21586912 ctttggtgagatttaaccatagaaaaactctaatgtgtt 21586874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 261
Target Start/End: Complemental strand, 10899994 - 10899867
Alignment:
Q  131 tttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtctt 230  Q
    ||||||||||| ||||||||||  |||||||   ||||||| ||| ||||||| ||||| || |||||||| ||| ||||||| |||| | ||  |||||    
T  10899994 tttaatttttaaattaaatttaaatttttgg---ttgttcatttttatgcaattttttttattaatctctattattttaaatttcttcactttgtgtctt 10899898  T
Q  231 tggtggattttaaccatagaaaaacactaat 261  Q
    ||||||  ||||||||||||||||| |||||    
T  10899897 tggtgggatttaaccatagaaaaactctaat 10899867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 13757575 - 13757659
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  |||| || ||| ||||||||||||| ||| ||| |||||||    
T  13757575 tgtttaatttttatattaaatttaaatttttggctgttgttcgttttcctgtaatttttttaatcaatccctattattttaaatt 13757659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 23140856 - 23140772
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  |||| |||||| ||||||||||||  ||| ||| |||||||    
T  23140856 tgtttaatttttatattaaatttaaatttttggctgttgttcgttttcctgcaatttttttaatcaatacctattattttaaatt 23140772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 37364410 - 37364342
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatc 197  Q
    ||||||||||||||||||||||||  ||||||| ||||||||  |||| |||||| |||||||||||||    
T  37364410 tgtttaatttttatattaaatttaaatttttggctgttgttcgttttcctgcaatttttttaatcaatc 37364342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 10901283 - 10901177
Alignment:
Q  128 ttgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggt 227  Q
    ||||||||||||||| ||||||||  ||||| || |||  |||||||||| ||||| |||||| |||| | ||| | |||||||||||||| | | ||||    
T  10901283 ttgtttaatttttatcttaaattttagttttgggatgtcattcactttcaagcaat-tttttattcaaccactattgtattaaattccttcacttctggt 10901185  T
Q  228 ctttggtg 235  Q
    ||||||||    
T  10901184 ctttggtg 10901177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 14376371 - 14376517
Alignment:
Q  109 gttagttttgagatgtaaattgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat--ttttaatcaatctctaatata 206  Q
    |||||||||  ||||| | || ||||||||||||||||||| || |||||| | ||||||   |||||||||| | |  |||||||||||||||| |||     
T  14376371 gttagtttttggatgtcatttatttaatttttatattaaatgtacgtttttagatgttgtgtgctttcatgcactgttgttttaatcaatctctattat- 14376469  T
Q  207 ttaaattccttctcctttggtctttggtggattttaaccatagaaaaa 254  Q
    || || |||||| | |||| |||||||| |  |||||| |||||||||    
T  14376470 ttcaagtccttcacttttgatctttggttggatttaactatagaaaaa 14376517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 38292013 - 38292114
Alignment:
Q  131 tttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtctt 230  Q
    ||||||||| ||| |||||| | |||||||| |||  ||  ||||||||||||||||||| | |||||||| ||| | |||||| |||   |||||||||    
T  38292013 tttaattttcatactaaattgaagtttttggatgtcttttgctttcatgcaatatttttacttaatctctattatttcaaattcattccgttttggtctt 38292112  T
Q  231 tg 232  Q
    ||    
T  38292113 tg 38292114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 21585592 - 21585548
Alignment:
Q  25 ttgtgtggtttctcttagcctaatgtgatggtccaacccattgta 69  Q
    ||||| |||||||||||||| ||||||||| ||||||| ||||||    
T  21585592 ttgtgaggtttctcttagccaaatgtgatgctccaacctattgta 21585548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 3372 - 3555
Alignment:
Q  36 ctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaa 135  Q
    |||||| |||||||||||||| ||||| ||||||| | | ||  | ||||  ||||||| ||||||| |||| |||||||||   |||| | ||||||||    
T  3372 ctcttaacctaatgtgatggttcaacctattgtaggcgctcttagaactctaaacattatgatgaactgttttgttagtttttgtatgtcatttgtttaa 3471  T
Q  136 tttttatattaaatttatgtttttgggtgttgttcactttcatgcaata-tttttaatcaatctctaatatattaaattccttc 218  Q
    ||||||||||||||||| |||||||| ||| ||||||| |||||||||| |||||||||||||| || ||| | ||||||||||    
T  3472 tttttatattaaatttaagtttttggatgtcgttcactgtcatgcaatattttttaatcaatctatattatttcaaattccttc 3555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 48669 - 48544
Alignment:
Q  131 tttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat-ttttaatcaatctctaatatattaaattccttctcctttggtct 229  Q
    ||||||||||||||||||||||  ||||||| |||||||| |||| || |||| | |||||| ||||| ||| ||| ||||||| |||| | ||| ||||    
T  48669 tttaatttttatattaaatttaaatttttggttgttgttcgcttttatccaatttcttttaagcaatccctattattttaaatttcttcacgttttgtct 48570  T
Q  230 ttggtggattttaaccatagaaaaac 255  Q
    |||||||| |||||||||||||||||    
T  48569 ttggtggaatttaaccatagaaaaac 48544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 13668157 - 13668033
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtc 228  Q
    |||||| |||||||||||||||||  ||| ||  ||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||| | ||  |||    
T  13668157 tgtttactttttatattaaatttaaatttctgattgttgttcattttcatgcaatatttttaatcaatccctattattttaaatttcttcactttgtgtc 13668058  T
Q  229 tttggtggattttaaccatagaaaa 253  Q
    ||||||||  |||||| ||||||||    
T  13668057 tttggtgggatttaactatagaaaa 13668033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 13681014 - 13680890
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtc 228  Q
    |||||| |||||||||||||||||  ||| ||  ||||||||| ||||||||||||||||||||||||| ||| ||| ||||||| |||| | ||  |||    
T  13681014 tgtttactttttatattaaatttaaatttctgattgttgttcattttcatgcaatatttttaatcaatccctattattttaaatttcttcactttgtgtc 13680915  T
Q  229 tttggtggattttaaccatagaaaa 253  Q
    ||||||||  |||||| ||||||||    
T  13680914 tttggtgggatttaactatagaaaa 13680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 22192875 - 22192985
Alignment:
Q  128 ttgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatattttt-aatcaatctctaatatattaaattccttctcctttgg 226  Q
    ||||||||||||||||||||||||| || ||||| ||| ||| ||||||||||||||||||| ||||||||| || ||| | |||||||||| | ||||     
T  22192875 ttgtttaatttttatattaaatttaagtgtttggatgtcgttaactttcatgcaatatttttgaatcaatctatattatttcaaattccttcacttttga 22192974  T
Q  227 tctttggtgga 237  Q
    | |||||||||    
T  22192975 tttttggtgga 22192985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 283850 - 283987
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtc 228  Q
    ||||||||||||||||| ||||||  ||| | | |||||||||||| |||| ||| ||||| ||||||| ||  ||| ||||||| | || ||||| |||    
T  283850 tgtttaatttttatattgaatttaaatttgttgttgttgttcacttccatgtaattttttttatcaatccctgttattttaaatttcctcaccttttgtc 283949  T
Q  229 tttggtggattttaaccatagaaaaacactaatgtgtt 266  Q
    |||||||   ||||||||||||||||| ||||||||||    
T  283950 tttggtgagatttaaccatagaaaaactctaatgtgtt 283987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 282
Target Start/End: Original strand, 39976763 - 39976920
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat----ttttaatcaatctctaatatattaaattccttctccttt 224  Q
    ||||||||||||||||| ||||||  ||||| | |||||||||||| | || ||| |    |||| ||||||| ||| ||| ||||||| ||   |||||    
T  39976763 tgtttaatttttatattgaatttaaattttttgttgttgttcacttccgtgtaatttattttttttatcaatccctattattttaaatttctgtaccttt 39976862  T
Q  225 ggtctttggtggattttaaccatagaaaaacactaatgtgttgggctgagttaacaaa 282  Q
     ||||||||||   ||||||||||||||||| ||||||||||  ||||| ||||||||    
T  39976863 tgtctttggtgagatttaaccatagaaaaactctaatgtgttatgctgaattaacaaa 39976920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 282
Target Start/End: Original strand, 13231002 - 13231155
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtc 228  Q
    ||||||||||||||||||||||||  ||||||| ||||||||| ||||||| |   ||||| || |||   || ||| ||||||| ||||   ||  |||    
T  13231002 tgtttaatttttatattaaatttaaatttttggttgttgttcattttcatggatatttttttattaattcatattattttaaatttcttcattttgtgtc 13231101  T
Q  229 tttggtggattttaaccatagaaaaacactaatgtgttgggctgagttaacaaa 282  Q
    |||||| || ||||||||||| |||||| ||||||||   ||||| ||||||||    
T  13231102 tttggtagaatttaaccataggaaaacaataatgtgtcatgctgaattaacaaa 13231155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 315290 - 315345
Alignment:
Q  84 tcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaattttt 140  Q
    ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||    
T  315290 tcacaacattacgatgaactgttttgttagtttt-agatgtcatttgtttaattttt 315345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 6555504 - 6555559
Alignment:
Q  84 tcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaattttt 140  Q
    ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||    
T  6555504 tcacaacattacgatgaactgttttgttagtttt-agatgtcatttgtttaattttt 6555559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 42756653 - 42756609
Alignment:
Q  136 tttttatattaaatttatgtttttgggtgttgttcactttcatgc 180  Q
    |||||||||||||| || |||||||||||| ||||||||||||||    
T  42756653 tttttatattaaatataagtttttgggtgtagttcactttcatgc 42756609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 13239987 - 13239916
Alignment:
Q  31 ggtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaac 102  Q
    |||||||||||| | |||||||||||| |||||||||||| ||||| |   ||||  |||||||||||||||    
T  13239987 ggtttctcttagtccaatgtgatggtctaacccattgtaggctcccgcaaaactctgaacattacgatgaac 13239916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 14253249 - 14253318
Alignment:
Q  89 acattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttt 158  Q
    |||||| ||||||| |||| ||| ||||| ||| || | ||||| ||||||||||||||||||| |||||    
T  14253249 acattatgatgaactgttttgtttgtttttagaagtcatttgttcaatttttatattaaatttaagtttt 14253318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 33012060 - 33011922
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaattccttctcctttggtc 228  Q
    ||||||||||||||||| ||||||  ||||| | |||||||||||| |||| ||| ||||| ||||||| ||| ||| ||||||| |||| ||||| |||    
T  33012060 tgtttaatttttatattgaatttaaattttttgttgttgttcacttccatgtaattttttttatcaatccctattattttaaatttcttcgccttttgtc 33011961  T
Q  229 -tttggtggattttaaccatagaaaaacactaatgtgtt 266  Q
     |||||||   |||||| |||||||||| ||||||||||    
T  33011960 ttttggtgagatttaactatagaaaaactctaatgtgtt 33011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 9025922 - 9025977
Alignment:
Q  84 tcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaattttt 140  Q
    ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||    
T  9025922 tcacaacattacgatgaactgttttgttagtttt-agatgtcatttgtttaattttt 9025977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 11804 - 11895
Alignment:
Q  128 ttgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctctaatatattaaattccttc 218  Q
    |||| |||||||||||||||||| | |||||| | |||||||| ||||||||||||||||| ||||||||||||| ||| | || |||||||    
T  11804 ttgtataatttttatattaaattgaagttttttgatgttgttcgctttcatgcaatattttataatcaatctctattatttcaacttccttc 11895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 26375039 - 26374940
Alignment:
Q  289 gcttagaaaattctttaaatgttgttgcgttttttaaccgaatctaactttatggt-aattaattacacaaaaatctacaactcattcaacaatttcata 387  Q
    |||||| ||||||||||||||||||||||  |||||| ||||||| || ||  ||| |||||||||||||||| |||  ||||| ||||||| |||||||    
T  26375039 gcttagtaaattctttaaatgttgttgcgaattttaatcgaatctgacatttgggtaaattaattacacaaaattctttaactccttcaacattttcata 26374940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 2929666 - 2929733
Alignment:
Q  135 atttttatattaaatttatgtttttgggtgttgttcactttcatgcaatat-ttttaatcaatctcta 201  Q
    ||||||||||||||| || ||| |||| | || |||||||||||||| ||| ||||||||||||||||    
T  2929666 atttttatattaaatataagttattggattttattcactttcatgcactatcttttaatcaatctcta 2929733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 1505 - 1554
Alignment:
Q  134 aatttttatattaaatttatgtttttgggtgttgttcactttcatgcaat 183  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||    
T  1505 aatttttatattaaatataagtttttgggtgtggttcactttcatgcaat 1554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 183
Target Start/End: Complemental strand, 566 - 517
Alignment:
Q  134 aatttttatattaaatttatgtttttgggtgttgttcactttcatgcaat 183  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||    
T  566 aatttttatattaaatataagtttttgggtgtggttcactttcatgcaat 517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 41753227 - 41753143
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttttaatcaatctctaatatattaaatt 213  Q
    ||||||||||||||||||||||||  ||||| | ||||||||  |||| |||||| ||||||||||||  ||| ||| |||||||    
T  41753227 tgtttaatttttatattaaatttaaattttttgttgttgttcgttttcctgcaatttttttaatcaatacctattattttaaatt 41753143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 31964963 - 31964908
Alignment:
Q  84 tcacaacattacgatgaacggtttagttagttttgagatgtaaattgtttaattttt 140  Q
    ||||||||||||||||||| |||| ||||||||| |||||| | |||||||||||||    
T  31964963 tcacaacattacgatgaactgttttgttagtttt-agatgtcatttgtttaattttt 31964908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 14873672 - 14873754
Alignment:
Q  137 ttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctctaatatattaaattccttc 218  Q
    ||||||||||| || | |||||| | |||| ||| ||||||||||||||||| ||||||||||||| ||| | || |||||||    
T  14873672 ttttatattaagttgaagttttttgatgtttttcgctttcatgcaatattttataatcaatctctattatttcaacttccttc 14873754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 45055429 - 45055356
Alignment:
Q  128 ttgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatttt-taatcaatctcta 201  Q
    |||| |||||||||| ||||||| | |||||| | |||||||  ||||||||||||||||| |||||||||||||    
T  45055429 ttgtataatttttat-ttaaattgaagttttttgatgttgtttgctttcatgcaatattttataatcaatctcta 45055356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 20443666 - 20443723
Alignment:
Q  129 tgtttaatttttatattaaatttatgtttttgggtgttgttcactttcatgcaatatt 186  Q
    ||||||| |||||||||||||||  | |||||| ||| |||| |||||||||||||||    
T  20443666 tgtttaagttttatattaaattttaggttttggatgtcgttcgctttcatgcaatatt 20443723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 36727485 - 36727376
Alignment:
Q  135 atttttatattaaatttatgtttttgggtgttgttcactttcatgcaata-tttttaatcaatctctaatatattaaattccttctcctttggtctttgg 233  Q
    ||||||||||||||| || |||||||| |||| |||  ||||||||| || |||||||||||||| || ||| | ||||| |||| |  ||| |||||||    
T  36727485 atttttatattaaatataagtttttggatgttattcgttttcatgcactattttttaatcaatctttattatttcaaatttcttcactcttgatctttgg 36727386  T
Q  234 -tggatttta 242  Q
     |||||||||    
T  36727385 ttggatttta 36727376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 38796926 - 38796975
Alignment:
Q  23 aattgtgtggtttctcttagcctaatgtgatggtccaacccattgtagac 72  Q
    |||||||||||| |||||||| |||||||||| | ||||||||| |||||    
T  38796926 aattgtgtggttgctcttagcataatgtgatgattcaacccattttagac 38796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 44810 - 44741
Alignment:
Q  89 acattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttt 158  Q
    |||||| ||||||| |||| ||| ||||| ||| || | ||||||||||||||||||||||||| |||||    
T  44810 acattatgatgaactgttttgtttgtttttagaagtcatttgtttaatttttatattaaatttaagtttt 44741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 153977 - 154046
Alignment:
Q  89 acattacgatgaacggtttagttagttttgagatgtaaattgtttaatttttatattaaatttatgtttt 158  Q
    |||||| ||||||| |||| ||| ||||| ||| || | ||||||||||||||||||||||||| |||||    
T  153977 acattatgatgaactgttttgtttgtttttagaagtcatttgtttaatttttatattaaatttaagtttt 154046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 27342344 - 27342415
Alignment:
Q  31 ggtttctcttagcctaatgtgatggtccaacccattgtagactccctccgtactcacaacattacgatgaac 102  Q
    |||||||||||| | |||||||||||||||||||||| || ||||| |   ||||  |||||||||||||||    
T  27342344 ggtttctcttagtccaatgtgatggtccaacccattgaaggctcccgcaaaactctgaacattacgatgaac 27342415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 49879361 - 49879414
Alignment:
Q  136 tttttatattaaatttatgtttttgggtgttgttcactttcatgcaatattttt 189  Q
    |||||||||||||| || |||||||| |||||||| |||||||| ||| |||||    
T  49879361 tttttatattaaatataagtttttggatgttgttccctttcatgtaattttttt 49879414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University