View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_low_17 (Length: 316)
Name: NF7241_low_17
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 39982878 - 39983179
Alignment:
| Q |
1 |
catgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39982878 |
catgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccaacaa |
39982977 |
T |
|
| Q |
101 |
attactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982978 |
attactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcaggag |
39983077 |
T |
|
| Q |
201 |
gaatcgcaccaaactacctaaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacctcttcatcattgtgtatgccatgttgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39983078 |
gaatcgcaccaaactacctaaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacctcttcatcattgtgtatgccatgttgatt |
39983177 |
T |
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| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
39983178 |
at |
39983179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 44915236 - 44915510
Alignment:
| Q |
1 |
catgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaa |
100 |
Q |
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|||||||||||||||||| |||| || ||||||||| |||||||||||| | ||||||||||||||| || || || ||||| ||| || ||||| ||| |
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| T |
44915236 |
catgctatttatcatcttacttgcgactttcctcgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttggaaagcaaccaacaa |
44915335 |
T |
|
| Q |
101 |
attactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctttacactggccaatactaggttcagg-- |
198 |
Q |
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||| ||||||||||| ||||| |||||||| ||||| || ||| |||||||||| ||||| |||||||||| |||||||| | | || |||||||| |
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| T |
44915336 |
gttattggcattttgtgaaatcatgggaaggagtaacggggattgtaatggttgttttaatgacaatagccttcacactggctagtccttggttcaggaa |
44915435 |
T |
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| Q |
199 |
aggaatcgcaccaaactacctaaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacctctt |
275 |
Q |
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| T |
44915436 |
aggaa--gggttaagctacctaaacccctcaatagtctaactggtttcaatgccttttggtactctcatcatctctt |
44915510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 44885597 - 44885769
Alignment:
| Q |
1 |
catgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaa |
100 |
Q |
| |
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||||||||||||||||||||||| || ||||| ||| |||||||||||| | ||||||||||||||| || || || ||||| ||| || || || ||| |
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| T |
44885597 |
catgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttggaaagcaagcaacaa |
44885696 |
T |
|
| Q |
101 |
attactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctt |
173 |
Q |
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|||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||| |||||||||||||||| |
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| T |
44885697 |
attattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttttaatggcaatagcctt |
44885769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 44898981 - 44899153
Alignment:
| Q |
1 |
catgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagccttttttcggagagaaaccatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | || |||| || | | |||||||||| |||| || || || ||||| ||| || || || ||| |
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| T |
44898981 |
catgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttttggaaagcaagcaacaa |
44899080 |
T |
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| Q |
101 |
attactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctt |
173 |
Q |
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||| ||||||||||| ||||| |||||||| |||||||| ||| |||||||||| ||||| |||| ||||| |
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| T |
44899081 |
gttattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttttaatgacaattgcctt |
44899153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 37067145 - 37067197
Alignment:
| Q |
220 |
aaacccttcaacaaactcacaggtttcaatgccttttggtattctcatcacct |
272 |
Q |
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|||||| |||| |||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
37067145 |
aaacccctcaagaaactcactggtttcaatgcattttggtattcacatcacct |
37067197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 46561752 - 46561697
Alignment:
| Q |
235 |
ctcacaggtttcaatgccttttggtattctcatcacctcttcatcattgtgtatgc |
290 |
Q |
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||||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| |
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| T |
46561752 |
ctcactggtttcaatgctttttggtattcacatcacctctttgtcattgtttatgc |
46561697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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