View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7241_low_19 (Length: 300)
Name: NF7241_low_19
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 39932534 - 39932799
Alignment:
| Q |
21 |
gcattgagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcgaca |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39932534 |
gcattaagaaaatattttcaaatcaagacacatttatcttaattgttgcatttctcgagtgaagacaagttccttaacaggggcaacaagagactcgaca |
39932633 |
T |
|
| Q |
121 |
taatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaaggg |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39932634 |
taatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccgtaacacgatcgacatatccaagacgtattcctacaggtaaaggg |
39932733 |
T |
|
| Q |
221 |
agttcaaataaacatgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39932734 |
agttcgaataaatatgtgtttgaaaagttatgaatcgattgataagtccaattccaataccttgat |
39932799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 120 - 286
Target Start/End: Original strand, 18148679 - 18148850
Alignment:
| Q |
120 |
ataatacctacaacttctctcaattctaccatgtccccatgaataggactccgcccataacacaatcgacatatccaagacatattcctacaggtaaagg |
219 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||| |
|
|
| T |
18148679 |
ataatacctacagcttctcccaattctaccaggtccccatgaataggactccgcccataacacaatcggcagatccaagacgtattcctacaggtaaagg |
18148778 |
T |
|
| Q |
220 |
gagttcaaataaaca-----tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
| |
|
| |||| |||||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18148779 |
gggttcgaataaatattggttgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
18148850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 49069112 - 49069066
Alignment:
| Q |
141 |
aattctaccatgtccccatgaataggactccgcccataacacaatcg |
187 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49069112 |
aattctaccaggtccccatgaataggactccgcccataacataatcg |
49069066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Complemental strand, 34210368 - 34210331
Alignment:
| Q |
249 |
tatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
34210368 |
tatgaatcgattgataagtccaattccaatatcttgat |
34210331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 12952873 - 12952822
Alignment:
| Q |
235 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaataccttgat |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
12952873 |
tgtgtttgaaaagttatgaatcgattgataagtccaattccaatatcttgat |
12952822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2363420 - 2363376
Alignment:
| Q |
235 |
tgtgtttgaaaagttatgaatcgattgataagtccaattcgaata |
279 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
2363420 |
tgtgtttgaaaagctatgaactgattgataagtccaattccaata |
2363376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University