View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_low_21 (Length: 296)
Name: NF7241_low_21
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 5375246 - 5374971
Alignment:
| Q |
14 |
cataaacaactggaagcaatgaatcagatgaaggttttccattgtaaagtgatgcaccagtgtaagtttttccatttccaagtgttatataactaggaaa |
113 |
Q |
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| T |
5375246 |
cataaacaactggaagcaatgaatcagatgaaggttttccattgtaaagtgatgcaccagtgtaagtttttccatttccaagtgttatataactaggaaa |
5375147 |
T |
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| Q |
114 |
atcgcggtcaattgttccggcgccaacagttgttatccatggtgctacatttgacaagctttcagcacttggtccaccatttcctgctgaagatgaaact |
213 |
Q |
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| T |
5375146 |
atcgcggtcaattgttccggcaccaacagttgttatccatggtgctacatttgacaagctttcagcacttggtccaccatttcctgctgaagatgaaact |
5375047 |
T |
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| Q |
214 |
agaattccatgagacattgctgtgaaagcaccaattgcaattatgtctctgtagtaatccattatgctaccaccaa |
289 |
Q |
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| T |
5375046 |
agaattccatgagacattgctgtgaaagcaccaattgcaattatgtctctgtagtaatccattatgctaccaccaa |
5374971 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 47367399 - 47367518
Alignment:
| Q |
85 |
ccatttccaagtgttatataactaggaaaatcgcggtcaattgttccggcgccaacagttgttatccatggtgctacatttgacaagctttcagcacttg |
184 |
Q |
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||||||||||| || ||||| ||| ||||||||||| || |||||||| || ||||| |||||||||||||| ||||| | ||| ||| | ||| | |
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| T |
47367399 |
ccatttccaagggtaatataggcagggaaatcgcggtctatagttccggcaccgacagtggttatccatggtgcaacattagccaaacttgctttactag |
47367498 |
T |
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| Q |
185 |
gtccaccatttcctgctgaa |
204 |
Q |
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| T |
47367499 |
gtccaccgtttcctgctgaa |
47367518 |
T |
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