View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_low_22 (Length: 261)
Name: NF7241_low_22
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 1155306 - 1155463
Alignment:
| Q |
98 |
cctaattaccttagcgatgttaaggtagaagaagagaggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
197 |
Q |
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| T |
1155306 |
cctaattaccttagcgatgttaaggtagaagaagagtggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcca |
1155405 |
T |
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| Q |
198 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcac |
255 |
Q |
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| T |
1155406 |
ttgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttctttcatctcac |
1155463 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1155209 - 1155260
Alignment:
| Q |
1 |
agcttcaagtgtttctgaatcagaaagaaacacgaaattcataatcagaaat |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1155209 |
agcttcaagtgtttctgaatcagaaagaaacacgaaatccataatcagaaat |
1155260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38665017 - 38664985
Alignment:
| Q |
1 |
agcttcaagtgtttctgaatcagaaagaaacac |
33 |
Q |
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| T |
38665017 |
agcttcaagtgtttctgaatcagaaagaaacac |
38664985 |
T |
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