View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7241_low_3 (Length: 993)
Name: NF7241_low_3
Description: NF7241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7241_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 199 - 686
Target Start/End: Original strand, 5149953 - 5150443
Alignment:
| Q |
199 |
tagcacaacctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagtta |
295 |
Q |
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| T |
5149953 |
tagcaaaacctaaaattaggaaaacctgtcttattctttacaaattcaacattaacctgagaaggtacattgttgaaccaagaataagaaggcaaggtta |
5150052 |
T |
|
| Q |
296 |
agcctagattagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatccca |
395 |
Q |
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| T |
5150053 |
aacctaagttagcaagctgatctgcacaactattaccttctctatatatgtgagaaacattaaaattaaacatagataaaatgaatagacaattgtccca |
5150152 |
T |
|
| Q |
396 |
tctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgata |
495 |
Q |
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| T |
5150153 |
cctatttcttagagaccaaggcactattttagaagacttgaacgccaataaaactagcatggaatccgtttccaaccataggttgtgccagttcttaaca |
5150252 |
T |
|
| Q |
496 |
tgagctatctctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattgagaacgcccctaagaagtcagaatctg |
595 |
Q |
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| T |
5150253 |
tgagcaatttcaattgctaccatagctgctataagttcagagtgaagagcagtagagactcccaagttaacggagaaagctcctagaaaatctgcatctg |
5150352 |
T |
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| Q |
596 |
aatttctaaagattcccccacaagctgcaagacctggatttccatgagctgcaccatcagtgttgcactttacccaattgaaaataggagg |
686 |
Q |
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| T |
5150353 |
agtttctaaaaattcctccacaagctgccaagcccggattaccctgcgctgccccgtcagtgttacacttaacccaattaaaaattggagg |
5150443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 208 - 569
Target Start/End: Original strand, 26448371 - 26448735
Alignment:
| Q |
208 |
ctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag---aagttaagcctagat |
304 |
Q |
| |
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|||||||| ||||| | ||||| ||||| |||||||||||||| |||| |||||| | | ||||||||||||||||||||| |||||| |||| || |
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| T |
26448371 |
ctataattcggaaagtctgtcttgttcctaacaaattcaacattaacctgaggaggtatagtgttgaaccaagaataagaaggcaaagttagacctaaat |
26448470 |
T |
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| Q |
305 |
tagctagttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattcct |
404 |
Q |
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| T |
26448471 |
tgacaagttgatctgcacaatgattgccttccctatatatatgagagaccttaaagttaaacctgcataaaagaaagagacaattatcccatctgtttct |
26448570 |
T |
|
| Q |
405 |
taaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagttatgccattctttgatatgagctatc |
504 |
Q |
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| T |
26448571 |
tagagaccaaggaacaatcttagatgatttaaaagccaagaaaacaagcatggagtctaattccaaccataagttaatccaatttttgacatctgctatt |
26448670 |
T |
|
| Q |
505 |
tctattgctaccatagctgttataagtttagaattcaatgcagatgtaactccaaggttgattga |
569 |
Q |
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| T |
26448671 |
tcaatagccaccatagctgcaataaatttagagtttaaagcagaagtgattccaagattaattga |
26448735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 388 - 522
Target Start/End: Complemental strand, 16187283 - 16187149
Alignment:
| Q |
388 |
ttatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagtttccaaccataagt-tatgccat |
486 |
Q |
| |
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|||||||||||||||||||| |||||||||||| || |||||||| ||||| | ||| || ||||| ||||| ||||| ||||| |||| ||||||| |
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| T |
16187283 |
ttatcccatctattccttaaactccaaggaacaatcttagaagacttaaaagctagaaaaactaacattgaatctgtttctaacca-aagtctatgccaa |
16187185 |
T |
|
| Q |
487 |
tctttgatatgagctatctctattgctaccatagct |
522 |
Q |
| |
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| T |
16187184 |
ttgttgatatgagctatctcaattgccaccatagct |
16187149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 444
Target Start/End: Complemental strand, 6642983 - 6642917
Alignment:
| Q |
378 |
aaacaaacaattatcccatctattccttaaggaccaaggaacaatttttgaagacttgaaagccaaa |
444 |
Q |
| |
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||||| |||||| ||||||||||| ||||| ||||||||| |||||| |||||||||| |||||| |
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| T |
6642983 |
aaacagacaattttcccatctatttcttaactgccaaggaactatttttaaagacttgaaggccaaa |
6642917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 14721984 - 14722044
Alignment:
| Q |
7 |
atggacatcaacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
67 |
Q |
| |
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| T |
14721984 |
atggacatcaacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
14722044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 39465259 - 39465207
Alignment:
| Q |
15 |
caacatttttgctaaccccactaaatttgaccatctatgaacatcactttaca |
67 |
Q |
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| T |
39465259 |
caacatttttgctaactccactaaatctgaccatatatgaacattactttaca |
39465207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 312 - 466
Target Start/End: Complemental strand, 37926979 - 37926825
Alignment:
| Q |
312 |
ttggtctgcacaatgattaccctcccgatatatatgcgagacattgaaattaaacctagacaagagaaacaaacaattatcccatctattccttaaggac |
411 |
Q |
| |
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|||||||||| |||||||||| |||| ||| ||||| || |||| || |||| |||||||| | | |||||||||||| ||||||||||| | || |
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| T |
37926979 |
ttggtctgcataatgattaccttccctataaatatgagacacatgaaacctaaatctagacaaaatatgcaaacaattatctcatctattcctaagacac |
37926880 |
T |
|
| Q |
412 |
caaggaacaatttttgaagacttgaaagccaaaaagaccaacatggaatcagttt |
466 |
Q |
| |
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||| |||| || || | |||||||| ||||| || || |||||||| ||||||| |
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| T |
37926879 |
caatgaactatcttaggtgacttgaatgccaagaaaactaacatggagtcagttt |
37926825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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